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property) { return Object.prototype.hasOwnProperty.call(object, property); };\n\n \t// __webpack_public_path__\n \t__webpack_require__.p = \"/\";\n\n \tvar jsonpArray = window[\"webpackJsonp\"] = window[\"webpackJsonp\"] || [];\n \tvar oldJsonpFunction = jsonpArray.push.bind(jsonpArray);\n \tjsonpArray.push = webpackJsonpCallback;\n \tjsonpArray = jsonpArray.slice();\n \tfor(var i = 0; i < jsonpArray.length; i++) webpackJsonpCallback(jsonpArray[i]);\n \tvar parentJsonpFunction = oldJsonpFunction;\n\n\n \t// add entry module to deferred list\n \tdeferredModules.push([5,\"chunk-vendors\"]);\n \t// run deferred modules when ready\n \treturn checkDeferredModules();\n","export * from \"-!../../../node_modules/mini-css-extract-plugin/dist/loader.js??ref--6-oneOf-1-0!../../../node_modules/css-loader/dist/cjs.js??ref--6-oneOf-1-1!../../../node_modules/vue-loader/lib/loaders/stylePostLoader.js!../../../node_modules/postcss-loader/src/index.js??ref--6-oneOf-1-2!../../../node_modules/cache-loader/dist/cjs.js??ref--0-0!../../../node_modules/vue-loader/lib/index.js??vue-loader-options!./Profile.vue?vue&type=style&index=0&id=39858e63&scoped=true&lang=css&\"","export * from \"-!../../../node_modules/mini-css-extract-plugin/dist/loader.js??ref--6-oneOf-1-0!../../../node_modules/css-loader/dist/cjs.js??ref--6-oneOf-1-1!../../../node_modules/vue-loader/lib/loaders/stylePostLoader.js!../../../node_modules/postcss-loader/src/index.js??ref--6-oneOf-1-2!../../../node_modules/cache-loader/dist/cjs.js??ref--0-0!../../../node_modules/vue-loader/lib/index.js??vue-loader-options!./Task.vue?vue&type=style&index=0&id=6c04b4c0&scoped=true&lang=css&\"","import Vue from 'vue'\nimport axios from 'axios'\n\nexport default {\n  state: {\n    user: '',\n    server: '',\n    host: '//' + location.hostname,\n    view: 'fullscreen',\n    scrollTop: 0,\n    history: [],\n    itemsPerPage: 5\n  },\n\n  mutations: {\n    setkv (state, {k, v}) {\n      state[k] = v\n    },\n\n    setUser (state, v) {\n      state.user = v\n    },\n\n    viewFullscreen (state) {\n      state.view = 'fullscreen'\n    },\n\n    viewWindow (state) {\n      state.view = 'window'\n    },\n\n    setScrollTop (state) {\n      state.scrollTop = document.documentElement.scrollTop\n    },\n\n    historyPush (state, val) {\n//      console.log(`history push ${val}`)\n//      console.log(`history:${state.history}`)\n      state.history.push(val)\n//      console.log(`history:${state.history}`)\n    },\n\n    historyPop (state) {\n      if (state.history.length > 0) {\n//        console.log(`history pop`)\n//        console.log(`history:${state.history}`)\n        state.history.pop()\n//        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r = response.data\n        if (r.status === 1) {\n          commit('setUser', r.user)\n          cb()\n        }\n      }).catch(error => {\n        alert(error.response.headers)\n      })\n    },\n\n    login ({commit, state, dispatch}, {username, password}) {\n      let formData = new FormData()\n      formData.append('username', username)\n      formData.append('password', password)\n\n      return new Promise((resolve, reject) => {\n        axios({\n          method: 'post',\n          url: state.host + '/dokhlab/actions/login',\n          data: formData,\n          config: {headers: {'Content-Type': 'multipart/form-data'}},\n          withCredentials: true\n        }).then(response => {\n          var r = response.data\n          if (r.status === 1) {\n            commit('setUser', r.user)\n            resolve()\n          } else {\n            reject(response.data)\n          }\n        }).catch(err => {\n          reject(err)\n        })\n      })\n    },\n\n    logout ({commit, state, dispatch}) {\n      return new Promise((resolve, reject) => {\n        axios({\n          method: 'get',\n          url: state.host + '/dokhlab/actions/logout',\n          withCredentials: true\n        }).then(response => {\n          commit('setUser', '')\n          resolve()\n        }).catch(err => {\n          reject(err)\n        })\n      })\n    },\n\n    signUp ({commit, state, dispatch}, par) {\n      let formData = new FormData()\n      for (let i in par) {\n        formData.append(i, par[i])\n      }\n\n      return new Promise((resolve, reject) => {\n        axios({\n          method: 'post',\n          url: state.host + '/dokhlab/actions/sign_up',\n          data: formData,\n          config: {headers: {'Content-Type': 'multipart/form-data'}},\n          withCredentials: true\n        }).then(response => {\n          var r = response.data\n          if (r.status === 1) {\n            commit('setUser', r.user)\n            resolve()\n          } else {\n            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\"),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.userRegister.username),expression:\"userRegister.username\"}],staticStyle:{\"width\":\"100px\"},domProps:{\"value\":(_vm.userRegister.username)},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.userRegister, \"username\", $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Password:\")]),_vm._v(\" \"),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.userRegister.password1),expression:\"userRegister.password1\"}],staticStyle:{\"width\":\"100px\"},attrs:{\"type\":\"password\"},domProps:{\"value\":(_vm.userRegister.password1)},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.userRegister, \"password1\", $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Confirm Pass:\")]),_vm._v(\" \"),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.userRegister.password2),expression:\"userRegister.password2\"}],staticStyle:{\"width\":\"100px\"},attrs:{\"type\":\"password\"},domProps:{\"value\":(_vm.userRegister.password2)},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.userRegister, \"password2\", $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"First Name:\")]),_vm._v(\" \"),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.userRegister.firstname),expression:\"userRegister.firstname\"}],staticStyle:{\"width\":\"100px\"},domProps:{\"value\":(_vm.userRegister.firstname)},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.userRegister, \"firstname\", $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Last Name:\")]),_vm._v(\" \"),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.userRegister.lastname),expression:\"userRegister.lastname\"}],staticStyle:{\"width\":\"100px\"},domProps:{\"value\":(_vm.userRegister.lastname)},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.userRegister, \"lastname\", $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Organization:\")]),_vm._v(\" \"),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.userRegister.affiliation),expression:\"userRegister.affiliation\"}],staticStyle:{\"width\":\"100px\"},domProps:{\"value\":(_vm.userRegister.affiliation)},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.userRegister, \"affiliation\", $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Email:\")]),_vm._v(\" \"),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.userRegister.email),expression:\"userRegister.email\"}],staticStyle:{\"width\":\"100px\"},domProps:{\"value\":(_vm.userRegister.email)},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.userRegister, \"email\", $event.target.value)}}})])])]),_c('div',{staticStyle:{\"text-align\":\"center\",\"margin-top\":\"15px\"}},[_c('button',{attrs:{\"type\":\"button\"},on:{\"click\":_vm.signUp}},[_vm._v(\"Register An Account\")])])])])])]):_vm._e(),(_vm.$store.state.user!='')?_c('div',[_c('div',{staticStyle:{\"float\":\"left\",\"width\":\"155px\"}},[_vm._m(5),_vm._m(6),_vm._m(7),_vm._m(8),(_vm.$store.state.user.level==='10')?_c('div',{staticClass:\"nav-menuitem\"},[_vm._m(9)]):_vm._e()]),_c('div',{staticStyle:{\"float\":\"left\",\"width\":\"595px\"}},[_c('keep-alive',{attrs:{\"include\":\"Submit\"}},[_c('router-view')],1)],1)]):_vm._e()])])}\nvar staticRenderFns = [function () {var _vm=this;var _h=_vm.$createElement;var _c=_vm._self._c||_h;return _c('div',{staticStyle:{\"background-color\":\"#d3d3d3\",\"width\":\"100%\",\"height\":\"50px\",\"line-height\":\"50px\"}},[_c('span',{staticStyle:{\"margin-left\":\"10px\",\"font-family\":\"'Times New Roman', Times, serif\",\"font-size\":\"27px\",\"color\":\"#707070\"}},[_vm._v(\"iFoldRNA v2\")]),_c('div',{staticStyle:{\"float\":\"right\",\"height\":\"100%\",\"color\":\"#a5a5a5\",\"margin-right\":\"10px\"}},[_c('b',[_vm._v(\"Dokholyan Group\")])]),_c('div',{staticStyle:{\"clear\":\"both\"}})])},function () {var _vm=this;var _h=_vm.$createElement;var _c=_vm._self._c||_h;return _c('div',{staticStyle:{\"margin-bottom\":\"15px\"}},[_c('b',[_vm._v(\"Welcome to iFoldRNA Ver 2.0\")]),_vm._v(\" - a web portal for interactive RNA folding simulations. We perform discrete molecular dynamics simulations of RNA using coarse-grained structural models (three-beads/residue). \")])},function () {var _vm=this;var _h=_vm.$createElement;var _c=_vm._self._c||_h;return _c('div',{staticStyle:{\"margin-bottom\":\"15px\",\"border\":\"2px solid #999999\",\"background-color\":\"#EEEEEE\",\"margin-right\":\"10px\",\"padding\":\"5px\"}},[_c('b',[_vm._v(\"Important note\")]),_vm._v(\": Please visit the Help Center before submitting your RNA foldig jobs. Especially, please read the section of \\\"Choosing iFoldRNA simulation-time\\\" for the appropraite simulation time. \")])},function () {var _vm=this;var _h=_vm.$createElement;var _c=_vm._self._c||_h;return _c('div',{staticStyle:{\"margin-bottom\":\"15px\"}},[_vm._v(\" To cite iFoldRNA in your research, please use the following references: \"),_c('ul',[_c('li',[_vm._v(\" A. Krokhotin, K. Houlihan, and N. V. Dokholyan, \\\"iFoldRNA v2: folding RNA with constraints\\\" \"),_c('i',[_vm._v(\"Bioinformatics\")]),_vm._v(\", 31: 2891-2893 (2015).\"),_c('br')]),_c('li',[_vm._v(\" S. Sharma, F. Ding, and N. V. Dokholyan, \\\"iFoldRNA:Three-dimensional RNA structure prediction and folding\\\" \"),_c('i',[_vm._v(\"Bioinformatics\")]),_vm._v(\", 24: 1951-1952 (2008).\"),_c('br')]),_c('li',[_vm._v(\" F. Ding, S. Sharma, P. Chalasani, V. V. Demidov, N. E. Broude, and N. V. Dokholyan, \\\"Large scale simulations of 3D RNA folding by discrete molecular dynamics: From structure prediction to folding mechanisms\\\" \"),_c('i',[_vm._v(\"RNA\")]),_vm._v(\", 14: 1164-1173 (2008).\"),_c('br')])])])},function () {var _vm=this;var _h=_vm.$createElement;var _c=_vm._self._c||_h;return _c('div',{staticStyle:{\"margin-bottom\":\"15px\"}},[_vm._v(\" We recommend you to carefully read the Terms of Use and the Privacy Policy. If you have any questions, please contact the \"),_c('a',{attrs:{\"href\":\"mailto:juw1179@psu.edu?cc=dokh@psu.edu&Subject=iFoldRNA%20Problem\"}},[_vm._v(\"iFoldRNA Team\")]),_vm._v(\". \")])},function () {var _vm=this;var _h=_vm.$createElement;var _c=_vm._self._c||_h;return _c('div',{staticClass:\"nav-menuitem\"},[_c('a',{attrs:{\"href\":\"#/submit\"}},[_c('img',{attrs:{\"src\":require(\"./assets/nav_submit.jpg\")}})])])},function () {var _vm=this;var _h=_vm.$createElement;var _c=_vm._self._c||_h;return _c('div',{staticClass:\"nav-menuitem\"},[_c('a',{attrs:{\"href\":\"#/profile\"}},[_c('img',{attrs:{\"src\":require(\"./assets/nav_profile.jpg\")}})])])},function () {var _vm=this;var _h=_vm.$createElement;var _c=_vm._self._c||_h;return _c('div',{staticClass:\"nav-menuitem\"},[_c('a',{attrs:{\"href\":\"#/queue\"}},[_c('img',{attrs:{\"src\":require(\"./assets/nav_queue.jpg\")}})])])},function () {var _vm=this;var _h=_vm.$createElement;var _c=_vm._self._c||_h;return _c('div',{staticClass:\"nav-menuitem\"},[_c('a',{attrs:{\"href\":\"#/help\"}},[_c('img',{attrs:{\"src\":require(\"./assets/nav_help.jpg\")}})])])},function () {var _vm=this;var _h=_vm.$createElement;var _c=_vm._self._c||_h;return _c('a',{attrs:{\"href\":\"#/users\"}},[_c('img',{attrs:{\"src\":require(\"./assets/nav_manageusers.jpg\")}})])}]\n\nexport { render, staticRenderFns }","import Vue from 'vue'\n\nexport var bus = new Vue()\n","<template>\n\n<div style=\"margin:0px auto;width:750px\">\n  <!-- Top -->\n  <div style=\"margin-bottom:25px;\">\n    <div style=\"background-color:#d3d3d3;width:100%;height:50px;line-height:50px;\">\n      <span style=\"margin-left:10px; font-family: 'Times New Roman', Times, serif; font-size:27px;color:#707070\">iFoldRNA v2</span>\n      <div style=\"float:right;height:100%;color:#a5a5a5;margin-right:10px\">\n        <b>Dokholyan Group</b>\n      </div>\n      <div style=\"clear:both\">\n      </div>\n    </div>\n\n    <div style=\"border-bottom: 1px solid #111111;background: #f1f1f1;padding: 2px 2px 4px 2px;\" v-if=\"$store.state.user!=''\">\n      Logged in as {{$store.state.user.username}} | <a style=\"color:#810808;cursor:pointer\" @click=\"logout\">Logout</a>\n    </div>\n  </div>\n\n  <!-- Main -->\n  <div>\n    <!-- Unlogin -->\n    <div style=\"font: normal normal 13px 'helvetica', georgia, arial\" v-if=\"$store.state.user==''\">\n      <div style=\"float:left;width:550px\">\n        <div style=\"margin-bottom:15px\">\n          <b>Welcome to iFoldRNA Ver 2.0</b> - a web portal for interactive RNA folding simulations. We perform discrete molecular dynamics simulations of RNA using coarse-grained structural models (three-beads/residue).\n        </div>\n\n        <div style=\"margin-bottom:15px;border: 2px solid #999999; background-color: #EEEEEE; margin-right: 10px; padding: 5px;\">\n          <b>Important note</b>: Please visit the Help Center before submitting your RNA foldig jobs. Especially, please read the section of \"Choosing iFoldRNA simulation-time\" for the appropraite simulation time.\n        </div>\n\n        <div style=\"margin-bottom:15px;\">\n          To cite iFoldRNA in your research, please use the following references:\n          <ul>\n            <li>\n              A. Krokhotin, K. Houlihan, and N. V. Dokholyan, \"iFoldRNA v2: folding RNA with constraints\" <i>Bioinformatics</i>, 31: 2891-2893 (2015).<br>\n            </li>\n\n            <li>\n              S. Sharma, F. Ding, and N. V. Dokholyan, \"iFoldRNA:Three-dimensional RNA structure prediction and folding\" <i>Bioinformatics</i>, 24: 1951-1952 (2008).<br>\n            </li>\n\n            <li>\n              F. Ding, S. Sharma, P. Chalasani, V. V. Demidov, N. E. Broude, and N. V. Dokholyan, \"Large scale simulations of 3D RNA folding by discrete molecular dynamics: From structure prediction to folding mechanisms\" <i>RNA</i>, 14: 1164-1173 (2008).<br>\n            </li>\n          </ul>\n        </div>\n\n        <div style=\"margin-bottom:15px;\">\n          We recommend you to carefully read the Terms of Use and the Privacy Policy. If you have any questions, please contact the <a href=\"mailto:juw1179@psu.edu?cc=dokh@psu.edu&Subject=iFoldRNA%20Problem\">iFoldRNA Team</a>.\n        </div>\n\n        <div style=\"margin-bottom:15px;\">\n          <fieldset>\n            <legend>How good is your RNA model?</legend>\n\n            <p>Submit the following form to estimate significance of RNA structure prediction</p>\n\n            <div style=\"text-align:center\">\n              <table style=\"table-layout:fixed;width:250px;margin:10px auto\">\n                <tr><td style=\"width:150px;text-align:right\">Length of the RNA molecule:</td><td><input style=\"width:50px\" v-model=\"form.length\"></td></tr>\n                <tr><td style=\"text-align:right\">Predicted RMSD:</td><td><input @keyup.enter=\"calcRnaPredSignificance\" style=\"width:50px\" v-model=\"form.rmsd\"></td></tr>\n              </table>\n\n              <button type=\"button\" @click=\"calcRnaPredSignificance\">Submit</button>\n\n              <div style=\"margin-top:20px;\" v-html=\"significance\"></div>\n            </div>\n          </fieldset>\n        </div>\n      </div>\n      <div style=\"float:left;width:200px\">\n        <div style=\"margin-bottom:30px\">\n          <table>\n            <tr><td style=\"width:100px\">Username:</td><td><input style=\"width:100px\" @keyup.enter=\"login\" v-model=\"userLogin.username\"></td></tr>\n            <tr><td>Password:</td><td><input style=\"width:100px\" @keyup.enter=\"login\" type=\"password\" v-model=\"userLogin.password\"></td></tr>\n          </table>\n          <button @click=\"login\" type=\"button\">Login</button>\n        </div>\n\n        <div>\n          <fieldset>\n            <legend>Register Account</legend>\n            <table>\n              <tr><td style=\"width:100px\">Username:</td>     <td><input style=\"width:100px\" v-model=\"userRegister.username\"></td></tr>\n              <tr><td>Password:</td>     <td><input type=\"password\" style=\"width:100px\" v-model=\"userRegister.password1\"></td></tr>  \n              <tr><td>Confirm Pass:</td> <td><input type=\"password\" style=\"width:100px\" v-model=\"userRegister.password2\"></td></tr>\n              <tr><td>First Name:</td>   <td><input style=\"width:100px\" v-model=\"userRegister.firstname\"></td></tr>\n              <tr><td>Last Name:</td>    <td><input style=\"width:100px\" v-model=\"userRegister.lastname\"></td></tr>\n              <tr><td>Organization:</td> <td><input style=\"width:100px\" v-model=\"userRegister.affiliation\"></td></tr>\n              <tr><td>Email:</td>        <td><input style=\"width:100px\" v-model=\"userRegister.email\"></td></tr>\n            </table>\n            <div style=\"text-align:center;margin-top:15px\">\n              <button @click=\"signUp\" type=\"button\">Register An Account</button>\n            </div>\n          </fieldset>\n        </div>\n\n      </div>\n    </div>\n\n    <!-- Login -->\n    <div v-if=\"$store.state.user!=''\">\n      <!-- Nav -->\n      <div style=\"float:left;width:155px\">\n        <div class=\"nav-menuitem\">\n          <a href=\"#/submit\">\n            <img src=\"./assets/nav_submit.jpg\">\n          </a>\n        </div>\n\n        <div class=\"nav-menuitem\">\n          <a href=\"#/profile\">\n            <img src=\"./assets/nav_profile.jpg\">\n          </a>\n        </div>\n\n        <div class=\"nav-menuitem\">\n          <a href=\"#/queue\">\n            <img src=\"./assets/nav_queue.jpg\">\n          </a>\n        </div>\n\n        <div class=\"nav-menuitem\">\n          <a href=\"#/help\">\n            <img src=\"./assets/nav_help.jpg\">\n          </a>\n        </div>\n\n        <div v-if=\"$store.state.user.level==='10'\" class=\"nav-menuitem\">\n          <a href=\"#/users\">\n            <img src=\"./assets/nav_manageusers.jpg\">\n          </a>\n        </div>\n\n      </div>\n\n      <div style=\"float:left;width:595px\">\n        <keep-alive include=\"Submit\">\n          <router-view/>\n        </keep-alive>\n        <!--\n        <router-view/>\n        -->\n      </div>\n    </div>\n  </div>\n\n</div>\n</template>\n\n<script>\nimport { bus } from './bus.js'\n// import Login from './components/Login'\nimport axios from 'axios'\n\nfunction calculateQValues(rnaLength, rmsd) {\n  const ITMAX = 100\n  const EPS = 3.0e-7\n  function gammln(xx) {\n    let x, tmp, ser\n    const cof = [76.18009173, -86.50532033, 24.01409822, -1.231739516, 0.120858003e-2, -0.536382e-5]\n    let j\n\n    x = xx - 1.0\n    tmp = x + 5.5\n    tmp -= (x + 0.5) * Math.log(tmp)\n    ser = 1.0\n    for (j = 0; j <= 5; j++) {\n      x += 1.0\n      ser += cof[j] / x\n    }\n    return -tmp + Math.log(2.50662827465 * ser)\n  }\n\n  function gser(a, x) {\n    let n\n    let sum = 0.0, del, ap\n\n    const gln = gammln(a)\n    if (x <= 0.0) {\n      if (x < 0.0) console.error('x less than 0 in routine GSER')\n      return 0.0\n    } else {\n      ap = a\n      del = sum = 1.0 / a\n      for (n = 1; n <= ITMAX; n++) {\n        ap += 1.0\n        del *= x / ap\n        sum += del\n        if (Math.abs(del) < Math.abs(sum) * EPS) {\n          return sum * Math.exp(-x + a * Math.log(x) - gln)\n        }\n      }\n      console.error('a too large, ITMAX too small in routine GSER')\n      return 0.0\n    }\n  }\n\n  function gcf(a, x) {\n    let n\n    let gold = 0.0, g, fac = 1.0, b1 = 1.0\n    let b0 = 0.0, anf, ana, an, a1, a0 = 1.0\n\n    const gln = gammln(a)\n    a1 = x\n    for (n = 1; n <= ITMAX; n++) {\n      an = n\n      ana = an - a\n      a0 = (a1 + a0 * ana) * fac\n      b0 = (b1 + b0 * ana) * fac\n      anf = an * fac\n      a1 = x * a0 + anf * a1\n      b1 = x * b0 + anf * b1\n      if (a1) {\n        fac = 1.0 / a1\n        g = b1 * fac\n        if (Math.abs((g - gold) / g) < EPS) {\n          return Math.exp(-x + a * Math.log(x) - gln) * g\n        }\n        gold = g\n      }\n    }\n    console.error('a too large, ITMAX too small in routine GCF')\n    return 0.0\n  }\n\n  function gammp(a, x) {\n    const gamser = gser(a, x)\n    if (x < (a + 1.0)) {\n      return gamser\n    } else {\n      const gammcf = gcf(a, x)\n      return 1.0 - gammcf\n    }\n  }\n\n  function erf(x) {\n    return x < 0.0 ? -gammp(0.5, x * x) : gammp(0.5, x * x)\n  }\n\n  const a_wo = 4.6 * Math.sqrt(2.0), b_wo = 9.1 * Math.sqrt(2.0)\n  const a_w = 3.6 * Math.sqrt(2.0), b_w = 11.2 * Math.sqrt(2.0)\n  const std = 1.8\n\n  const ave_wo = a_wo * Math.pow(rnaLength, 0.41) - b_wo\n  const ave_w = a_w * Math.pow(rnaLength, 0.41) - b_w\n\n  const z_wo = (rmsd - ave_wo) / std\n  const z_w = (rmsd - ave_w) / std\n  const sqrt2 = Math.sqrt(2.0)\n\n  const q_wo = (1.0 + erf(z_wo / sqrt2)) / 2.0\n  const q_w = (1.0 + erf(z_w / sqrt2)) / 2.0\n\n  return { q_wo, q_w }\n}\n\n\nexport default {\n  name: 'app',\n\n  data () {\n    return {\n      form: {\n        length: '',\n        rmsd: ''\n      },\n      userLogin: {\n        username: '',\n        password: ''\n      },\n      userRegister: {\n        username: '',\n        password1: '',\n        password2: '',\n        organization: '',\n        email: ''\n      },\n      formLabelWidth: 150,\n      userVisible: false,\n      significance: '',\n    }\n  },\n\n  computed: {\n    frontConfig () {\n      return this.$store.state.frontConfig\n    }\n  },\n\n  components: {\n  },\n\n  methods: {\n    \n    redirect (url) {\n      window.location.href = url\n    },\n\n    login () {\n      let v = this\n      v.$store.dispatch('login', { username: v.userLogin.username, password: v.userLogin.password }).then(() => {\n        window.location.href = '#/Submit'\n      })\n    },\n\n    logout () {\n      let v = this\n      v.$store.dispatch('logout')\n    },\n\n    signUp () {\n      let v = this\n      v.$store.dispatch('signUp', v.userRegister).then(() => {\n        window.location.href = '#/Submit'\n      })\n    },\n\n    calcRnaPredSignificance () {\n      let v = this\n\n      const { q_wo, q_w } = calculateQValues(v.form.length, v.form.rmsd);\n      let i = parseFloat(q_wo).toExponential(3)\n      let j = parseFloat(q_w).toExponential(3)\n      v.significance = `Without base pair constraints:${i}<br> With base pair constraints:${j}`\n    }\n  },\n\n  mounted () {\n    var v = this\n\n    bus.$on('switch-router', (name) => {\n      v.active = name\n    })\n    bus.$on('switch-task', (id) => {\n      v.task_id = id\n    })\n    var top = (document.body.clientHeight - 600) / 2\n    var left = (document.body.clientWidth - 1000) / 2\n    v.top = (top < 0 ? 0 : top)\n    v.left = (left < 0 ? 0 : left)\n\n    v.$store.commit('setkv', {k:'server',v:'ifoldrna'})\n\n    // Auto-Login\n    v.$store.dispatch('autoLogin')\n  }\n}\n</script>\n\n<style>\nhtml {\n  overflow-y: scroll;\n  font-size: 12px;\n  width: 100%;\n  height: 100%;\n  background-color: #f7f7f7;\n  /*\n  background: url('./assets/app-bg.jpg') no-repeat 50%;\n  */\n  font-family: 'Avenir', Helvetica, Arial, sans-serif;\n  -webkit-font-smoothing: antialiased;\n  -moz-osx-font-smoothing: grayscale;\n}\n\ninput {\n  background: #d6d6d6;\n  border: 1px solid #A7A7A7;\n  color: #111111;\n}\n\ntextarea {\n  background: #d6d6d6;\n  border: 1px solid #A7A7A7;\n  color: #111111;\n}\n\n.nav-menuitem {\n  margin: 10px 0px;\n}\n\nimg {\n  margin: 0px;\n}\n\nbody {\n  margin: 8px;\n  padding: 0px;\n}\n\n#app {\n  margin: 0px;\n  padding: 0px;\n  width: 100%;\n  height: 100%;\n  position: relative;\n}\n\ntable {\n  height: 100%;\n  width: 100%;\n  border-collapse:collapse;\n  overflow: hidden;\n}\n\ntr {\n  width: 100%;\n  height: 100%;\n  margin: 0px;\n}\n\n.nav {\n  height: 100%;\n  width: 250px;\n  min-width: 250px;\n  background: #2e3238;\n  color: white;\n  padding: 0px;\n  vertical-align: text-top;\n}\n\n.nav-header {\n  margin: 20px;\n  line-height: 40px;\n  vertical-align: middle;\n}\n\n.content {\n  background-color: white;\n  align: center;\n  padding: 0px;\n  overflow-y: auto;\n  position: relative;\n  /*\n  background-image: url('./assets/intro-bg.png');\n   */\nbackground-repeat: no-repeat;\nbackground-position: 0px 0px;\nbackground-size: auto 220px;\n}\n\n.content-content {\n  width: 720px;\n  height: 600px;\n  margin: 0px auto;\n}\n\n/*\n.zoom {\n  position: absolute;\n  right: 5px;\n  top: 5px;\n  font-size: 18px;\n  color: #878d99;\n  cursor: pointer;\n  z-index: 99;\n}\n */\n\n.left-nav {\n  margin-bottom: 0px;\n}\n\n.box-card {\n  padding: 0px 0px;\n}\n\na {\n  text-decoration: None;\n}\n\nli.menu-item {\n  padding: 0 20px;\n  font-size: 14px;\n  /*color: #2d2f33;*/\n  height: 56px;\n  line-height: 56px;\n  cursor: pointer;\n}\n\n.submenu-list li.menu-item {\n  padding: 0 40px;\n}\n\nli.menu-item:hover {\n  /*background-color: #ecf5ff*/\n}\n\nli.menu-item.is-active {\n  /*\n  color: #ffd04b;\n   */\nfont-weight: bold;\ncolor: #67c23a;\n}\n\nli.menu-item * {\n  vertical-align: middle;\n}\n\nli.menu-item i {\n  margin-right: 5px;\n  width: 24px;\n  text-align: center;\n  font-size: 18px;\n  color: #878d99;\n}\n\nli.menu-item.is-active i {\n  color: inherit;\n}\n\n.submenu-title {\n  position: relative;\n}\n\nli.menu-item i.submenu-arrow {\n  position: absolute;\n  right: 20px;\n  top: 50%;\n  margin-top: -7px;\n  font-size: 12px;\n}\n\n#bg {\n  margin: 0px 0px 10px 0px;\n}\n\ndiv.el-card__header {\n  padding: 0px 20px;\n  /*\n  background-color: #223e4a;\n  color: white;\n   */\n}\n\n.grey-button {\n  color: #5a5e66;\n}\n\n.unselectable {\n  -moz-user-select: -moz-none;\n  -khtml-user-select: none;\n  -webkit-user-select: none;\n  -ms-user-select: none;\n  user-select: none;\n}\n\na {\n  color: rgb(144, 147, 153);\n}\n\na:hover {\n  color: rgb(144,147,153);\n}\n\na:visited {\n  color: rgb(144, 147, 153);\n}\n\n.el-button--text {\n  color: #67c23a;\n}\n\n</style>\n\n","import mod from \"-!../../node_modules/cache-loader/dist/cjs.js??ref--12-0!../../node_modules/thread-loader/dist/cjs.js!../../node_modules/babel-loader/lib/index.js!../../node_modules/cache-loader/dist/cjs.js??ref--0-0!../../node_modules/vue-loader/lib/index.js??vue-loader-options!./App.vue?vue&type=script&lang=js&\"; export default mod; export * from \"-!../../node_modules/cache-loader/dist/cjs.js??ref--12-0!../../node_modules/thread-loader/dist/cjs.js!../../node_modules/babel-loader/lib/index.js!../../node_modules/cache-loader/dist/cjs.js??ref--0-0!../../node_modules/vue-loader/lib/index.js??vue-loader-options!./App.vue?vue&type=script&lang=js&\"","import { render, staticRenderFns } from \"./App.vue?vue&type=template&id=669dd7b8&\"\nimport script from \"./App.vue?vue&type=script&lang=js&\"\nexport * from \"./App.vue?vue&type=script&lang=js&\"\nimport style0 from \"./App.vue?vue&type=style&index=0&lang=css&\"\n\n\n/* normalize component */\nimport normalizer from \"!../../node_modules/vue-loader/lib/runtime/componentNormalizer.js\"\nvar component = normalizer(\n  script,\n  render,\n  staticRenderFns,\n  false,\n  null,\n  null,\n  null\n  \n)\n\nexport default component.exports","var render = function () {var _vm=this;var _h=_vm.$createElement;var _c=_vm._self._c||_h;return _c('div',[_c('div',{staticStyle:{\"border-bottom\":\"2px dotted #111111\",\"font\":\"normal normal 18px 'trebuchet ms', georgia, arial\",\"color\":\"#686667\",\"margin-bottom\":\"30px\"}},[_vm._v(\" Profile \")]),_c('p',[_vm._v(\"Enter your current password if you wish to modify any of your account's details. \")]),_c('table',{staticClass:\"ifoldrnatable\",staticStyle:{\"width\":\"80%\",\"border\":\"1px solid #C3C1C2\",\"border-collapse\":\"separate\"},attrs:{\"border\":\"0\",\"cellpadding\":\"0\",\"cellspacing\":\"0\"}},[_c('tbody',[_c('tr',[_c('td',{attrs:{\"width\":\"60%\"}},[_vm._v(\"Username:\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.user.username),expression:\"user.username\"}],staticStyle:{\"width\":\"200px\",\"cursor\":\"auto\"},attrs:{\"id\":\"username\",\"type\":\"text\",\"name\":\"username\",\"maxlength\":\"10\",\"autocomplete\":\"off\"},domProps:{\"value\":(_vm.user.username)},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.user, \"username\", $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Password:\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.user.password),expression:\"user.password\"}],staticStyle:{\"width\":\"200px\"},attrs:{\"id\":\"password\",\"type\":\"password\",\"name\":\"password\",\"maxlength\":\"15\",\"autocomplete\":\"off\"},domProps:{\"value\":(_vm.user.password)},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.user, \"password\", $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"First Name:\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.user.firstname),expression:\"user.firstname\"}],staticStyle:{\"width\":\"200px\"},attrs:{\"id\":\"namefirst\",\"type\":\"text\",\"name\":\"namefirst\",\"maxlength\":\"15\"},domProps:{\"value\":(_vm.user.firstname)},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.user, \"firstname\", $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Last Name:\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.user.lastname),expression:\"user.lastname\"}],staticStyle:{\"width\":\"200px\"},attrs:{\"id\":\"namelast\",\"type\":\"text\",\"name\":\"namelast\",\"maxlength\":\"15\"},domProps:{\"value\":(_vm.user.lastname)},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.user, \"lastname\", $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Email:\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.user.email),expression:\"user.email\"}],staticStyle:{\"width\":\"200px\"},attrs:{\"id\":\"email\",\"type\":\"text\",\"name\":\"email\",\"maxlength\":\"60\"},domProps:{\"value\":(_vm.user.email)},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.user, \"email\", $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Organization:\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.user.affiliation),expression:\"user.affiliation\"}],staticStyle:{\"width\":\"200px\"},attrs:{\"id\":\"organization\",\"type\":\"text\",\"name\":\"organization\",\"maxlength\":\"20\"},domProps:{\"value\":(_vm.user.affiliation)},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.user, \"affiliation\", $event.target.value)}}})])])])])])}\nvar staticRenderFns = []\n\nexport { render, staticRenderFns }","<template>\n<div>\n  <div style=\"border-bottom: 2px dotted #111111;font: normal normal 18px 'trebuchet ms', georgia, arial;color: #686667;margin-bottom:30px\">\n    Profile\n  </div>\n  <p>Enter your current password if you wish to modify any of your account's details. </p>\n  <table border=\"0\" cellpadding=\"0\" cellspacing=\"0\" style=\"width:80%;border: 1px solid #C3C1C2;border-collapse:separate;\" class=\"ifoldrnatable\">\n    <tbody>\n      <tr>\n        <td width=\"60%\">Username:</td>\n        <td><input id=\"username\" type=\"text\" name=\"username\" style=\"width: 200px; cursor: auto;\" maxlength=\"10\" autocomplete=\"off\" v-model=\"user.username\"></td>\n      </tr>\n      <tr>\n        <td>Password:</td>\n        <td><input id=\"password\" type=\"password\" name=\"password\" style=\"width: 200px;\" maxlength=\"15\" autocomplete=\"off\" v-model=\"user.password\"/></td>\n      </tr>\n      <tr>\n        <td>First Name:</td>\n        <td><input id=\"namefirst\" type=\"text\" name=\"namefirst\" style=\"width:200px\" maxlength=\"15\" v-model=\"user.firstname\" /></td>\n      </tr>\n      <tr>\n        <td>Last Name:</td>\n        <td><input id=\"namelast\" type=\"text\" name=\"namelast\" style=\"width:200px\" maxlength=\"15\" v-model=\"user.lastname\"/></td>\n      </tr>\n      <tr>\n        <td>Email:</td>\n        <td><input id=\"email\" type=\"text\" name=\"email\" style=\"width:200px\" maxlength=\"60\" v-model=\"user.email\"></td>\n      </tr>\n      <tr>\n        <td>Organization:</td>\n        <td><input id=\"organization\" type=\"text\" name=\"organization\" style=\"width:200px\" maxlength=\"20\" v-model=\"user.affiliation\"></td>\n      </tr>\n      <!--\n      <tr>\n        <td colspan=\"2\" align=\"center\"> <input type=\"Submit\" value=\"Update\" style=\"width:150px\" @click=\"updateUser\"> <input type=\"Submit\" value=\"Delete Account\" style=\"width:150px\" @click=\"deleteUser\"></td>\n      </tr>\n      -->\n    </tbody>\n  </table>\n</div>\n\n</template>\n\n<script>\n// import { bus } from '../bus.js'\n// import axios from 'axios'\n\nexport default {\n  name: 'Profile',\n\n  data () {\n    return {\n      user: {}\n    }\n  },\n\n  methods: {\n    updateUser () {\n    },\n\n    deleteUser () {\n    }\n  },\n\n  mounted () {\n    this.user = this.$store.state.user\n    console.log(this.user)\n  }\n}\n</script>\n\n<!-- Add \"scoped\" attribute to limit CSS to this component only -->\n<style scoped>\n\n.ifoldrnatable * {\n  font: normal 12px \"Trebuchet MS\", Verdana, Arial, Helvetica, sans-serif;\n}\n\n.ifoldrnatable tr {\n  height: 20px;\n}\n\n.ifoldrnatable tr td {\n  background: #fff;\n  border-right: 1px solid #CCCCCC;\n  border-bottom: 1px solid #CCCCCC;\n  color: #686868;\n  padding: 5px;\n  /* max-height: 20px; */\n  max-width: 50px;\n  word-wrap: break-word;\n  word-break: break-all;\n}\n\n</style>\n\n","import mod from \"-!../../../node_modules/cache-loader/dist/cjs.js??ref--12-0!../../../node_modules/thread-loader/dist/cjs.js!../../../node_modules/babel-loader/lib/index.js!../../../node_modules/cache-loader/dist/cjs.js??ref--0-0!../../../node_modules/vue-loader/lib/index.js??vue-loader-options!./Profile.vue?vue&type=script&lang=js&\"; export default mod; export * from \"-!../../../node_modules/cache-loader/dist/cjs.js??ref--12-0!../../../node_modules/thread-loader/dist/cjs.js!../../../node_modules/babel-loader/lib/index.js!../../../node_modules/cache-loader/dist/cjs.js??ref--0-0!../../../node_modules/vue-loader/lib/index.js??vue-loader-options!./Profile.vue?vue&type=script&lang=js&\"","import { render, staticRenderFns } from \"./Profile.vue?vue&type=template&id=39858e63&scoped=true&\"\nimport script from \"./Profile.vue?vue&type=script&lang=js&\"\nexport * from \"./Profile.vue?vue&type=script&lang=js&\"\nimport style0 from \"./Profile.vue?vue&type=style&index=0&id=39858e63&scoped=true&lang=css&\"\n\n\n/* normalize component */\nimport normalizer from \"!../../../node_modules/vue-loader/lib/runtime/componentNormalizer.js\"\nvar component = normalizer(\n  script,\n  render,\n  staticRenderFns,\n  false,\n  null,\n  \"39858e63\",\n  null\n  \n)\n\nexport default component.exports","var render = function () {var _vm=this;var _h=_vm.$createElement;var _c=_vm._self._c||_h;return _vm._m(0)}\nvar staticRenderFns = [function () {var _vm=this;var _h=_vm.$createElement;var _c=_vm._self._c||_h;return _c('div',[_c('div',{staticStyle:{\"border-bottom\":\"2px dotted #111111\",\"font\":\"normal normal 18px 'trebuchet ms', georgia, arial\",\"color\":\"#686667\",\"margin-bottom\":\"30px\"}},[_vm._v(\" Help \")]),_c('p',{staticClass:\"section-title\"},[_vm._v(\"General\")]),_c('div',{staticClass:\"section-content\"},[_c('p',[_vm._v(\"The iFoldRNA is a physical simulation-based automated RNA structure prediction webserver designed to predict three-dimensional RNA structure based on available sequence data. The server operates in three different modes: \")]),_c('p',[_vm._v(\"1) RNA modeling. In this mode the server predicts RNA tertiary structure solely based on the nucleotide sequence provided. This mode works for RNAs, which are less than 50 nucleotides long. The predicted structures are typically within 4A Root-Mean-Square deviation (RMSD) from experimentally determined structures. This limitation on RNA size is due to inaccuracies in the force-field and insufficient sampling. Increasing sequence size quickly becomes computationally prohibitive, since the RNA conformational space grows exponentially.\")]),_c('p',[_vm._v(\"2) Thermodynamic analysis. In this mode, various thermodynamic properties of RNA folding are inferred using replica-exchange DMD simulations. \")]),_c('p',[_vm._v(\"3) RNA modeling using HRP restraints. In this mode, a user can provide nucleotide solvent accessibility measured from reactivities from hydroxyl radical probing experiments as restraints. By use of experimental restraints, sampling conformational space can be significantly reduced, which allows us to predict the tertiary structure of RNAs up to a few hundred nucleotides long (for more details see \\\"Structure refinement using Constraints\\\" section). \")]),_c('p',[_vm._v(\"4) RNA modeling using NMR restraints. In this mode, a user can provide NMR restraints. \")])]),_c('p',{staticClass:\"section-title\"},[_vm._v(\"RNA Modeling Using Constraints\")]),_c('div',{staticClass:\"section-content\"},[_c('p',[_vm._v(\"Experimental restraints can be used to restrict RNA conformational space sampled to predict RNA tertiary structure. The current version of iFoldRNA webserver works only with three types of restraints: base-pairing information, nucleotide solvent accessibility, and NMR restraints. Base-pairing is provided as a list of base pairs, which can be derived from sequence covariation analysis or using SHAPE technique (Low and Weeks. \\\"SHAPE-directed RNA secondary structure prediction.\\\" Methods 52.2 (2010): 150-158). Nucleotide solvent accessibility is provided as a list of reactivities measured from hydroxyl radical probing (HRP) experiments (Ding, et al. \\\"Three-dimensional RNA structure refinement by hydroxyl radical probing.\\\" Nature methods 9.6 (2012): 603-608).\")]),_c('p',[_vm._v(\"The webserver interface is self-explanatory. Examples are provided for each mode. \")])]),_c('p',[_c('b',[_vm._v(\"Please contact juw1179@psu.edu if further help is needed.\")])])])}]\n\nexport { render, staticRenderFns }","<template>\n<div>\n  <div style=\"border-bottom: 2px dotted #111111;font: normal normal 18px 'trebuchet ms', georgia, arial;color: #686667;margin-bottom:30px\">\n    Help\n  </div>\n  <p class=\"section-title\">General</p>\n  <div class=\"section-content\">\n    <p>The iFoldRNA is a physical simulation-based automated RNA structure prediction webserver designed to predict three-dimensional RNA structure based on available sequence data. The server operates in three different modes: </p>\n\n    <p>1) RNA modeling. In this mode the server predicts RNA tertiary structure solely based on the nucleotide sequence provided. This mode works for RNAs, which are less than 50 nucleotides long. The predicted structures are typically within 4A Root-Mean-Square deviation (RMSD) from experimentally determined structures. This limitation on RNA size is due to inaccuracies in the force-field and insufficient sampling. Increasing sequence size quickly becomes computationally prohibitive, since the RNA conformational space grows exponentially.</p>\n\n    <p>2) Thermodynamic analysis.  In this mode, various thermodynamic properties of RNA folding are inferred using replica-exchange DMD simulations. </p>\n\n    <p>3) RNA modeling using HRP restraints. In this mode, a user can provide nucleotide solvent accessibility measured from reactivities from hydroxyl radical probing experiments as restraints. By use of experimental restraints, sampling conformational space can be significantly reduced, which allows us to predict the tertiary structure of RNAs up to a few hundred nucleotides long (for more details see \"Structure refinement using Constraints\" section). </p>\n\n    <p>4) RNA modeling using NMR restraints. In this mode, a user can provide NMR restraints. </p>\n  </div>\n\n  <p class=\"section-title\">RNA Modeling Using Constraints</p>\n  <div class=\"section-content\">\n    <p>Experimental restraints can be used to restrict RNA conformational space sampled to predict RNA tertiary structure. The current version of iFoldRNA webserver works only with three types of restraints: base-pairing information, nucleotide solvent accessibility, and NMR restraints. Base-pairing is provided as a list of base pairs, which can be derived from sequence covariation analysis or using SHAPE technique (Low and Weeks. \"SHAPE-directed RNA secondary structure prediction.\" Methods 52.2 (2010): 150-158). Nucleotide solvent accessibility is provided as a list of reactivities measured from hydroxyl radical probing (HRP) experiments (Ding, et al. \"Three-dimensional RNA structure refinement by hydroxyl radical probing.\" Nature methods 9.6 (2012): 603-608).</p>\n\n    <p>The webserver interface is self-explanatory. Examples are provided for each mode. </p>\n  </div>\n\n  <p><b>Please contact juw1179@psu.edu if further help is needed.</b></p>\n</div>\n\n</template>\n\n<script>\n// import { bus } from '../bus.js'\n// import axios from 'axios'\n\nexport default {\n  name: 'Help',\n\n  data () {\n    return {\n    }\n  }\n}\n</script>\n\n<!-- Add \"scoped\" attribute to limit CSS to this component only -->\n<style scoped>\n\n.section-title {\n  color: #B10808;\n  font-size: 14px;\n  font-weight: bold;\n}\n\n.section-content {\n  font-size: 12px;\n  line-height: 150%;\n}\n\n</style>\n\n","import mod from \"-!../../../node_modules/cache-loader/dist/cjs.js??ref--12-0!../../../node_modules/thread-loader/dist/cjs.js!../../../node_modules/babel-loader/lib/index.js!../../../node_modules/cache-loader/dist/cjs.js??ref--0-0!../../../node_modules/vue-loader/lib/index.js??vue-loader-options!./Help.vue?vue&type=script&lang=js&\"; export default mod; export * from \"-!../../../node_modules/cache-loader/dist/cjs.js??ref--12-0!../../../node_modules/thread-loader/dist/cjs.js!../../../node_modules/babel-loader/lib/index.js!../../../node_modules/cache-loader/dist/cjs.js??ref--0-0!../../../node_modules/vue-loader/lib/index.js??vue-loader-options!./Help.vue?vue&type=script&lang=js&\"","import { render, staticRenderFns } from \"./Help.vue?vue&type=template&id=521a5851&scoped=true&\"\nimport script from \"./Help.vue?vue&type=script&lang=js&\"\nexport * from \"./Help.vue?vue&type=script&lang=js&\"\nimport style0 from \"./Help.vue?vue&type=style&index=0&id=521a5851&scoped=true&lang=css&\"\n\n\n/* normalize component */\nimport normalizer from \"!../../../node_modules/vue-loader/lib/runtime/componentNormalizer.js\"\nvar component = normalizer(\n  script,\n  render,\n  staticRenderFns,\n  false,\n  null,\n  \"521a5851\",\n  null\n  \n)\n\nexport default component.exports","var render = function () {var _vm=this;var _h=_vm.$createElement;var _c=_vm._self._c||_h;return _c('div',[_c('div',{staticStyle:{\"border-bottom\":\"2px dotted #111111\",\"font\":\"normal normal 18px 'trebuchet ms', georgia, arial\",\"color\":\"#686667\",\"margin-bottom\":\"30px\"}},[_vm._v(\" Submit a task \")]),_c('h4',[_vm._v(\"Step 1: Select the Type of Task\")]),_c('div',[(_vm.taskType===-1||_vm.taskType===0)?_c('div',[(_vm.taskType===-1||_vm.taskType===0)?_c('div',[_c('div',{staticClass:\"step-box-header\",on:{\"click\":function($event){_vm.showTypeContent=0}}},[_vm._v(\" 1. RNA Modeling \"),_c('div',{staticClass:\"step-box-button\"},[(_vm.taskType===-1)?_c('a',{on:{\"click\":function($event){_vm.taskType=0}}},[_vm._v(\"Choose this task\")]):_vm._e(),(_vm.taskType===0)?_c('a',{on:{\"click\":function($event){_vm.taskType=-1}}},[_vm._v(\"Choose a different task\")]):_vm._e()]),_c('div',{staticClass:\"clear:both\"})]),(_vm.showTypeContent===0)?_c('div',{staticClass:\"step-box-content\"},[_vm._v(\" In RNA structure prediction, folding starts from a linear conformation of the protein at the initial temperature given, and the temperature is reduced at the specified rate until the system reaches the final temperature. The user may also specify the RNA sequence using a FASTA/NDB file format and replica exchahnge folding simulation is performed starting from a linear RNA conformation. \")]):_vm._e()]):_vm._e(),(_vm.taskType===0)?_c('div',[_c('h4',[_vm._v(\"Step 2: Please fill these inputs:\")]),_c('div',{staticClass:\"step-table\"},[_c('table',[_c('tr',[_c('td',{staticStyle:{\"width\":\"60%\"}},[_vm._v(\"Task title (Optional)\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.taskConfig[0].title),expression:\"taskConfig[0].title\"}],domProps:{\"value\":(_vm.taskConfig[0].title)},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.taskConfig[0], \"title\", $event.target.value)}}})])]),_c('tr',[_c('td',{staticStyle:{\"width\":\"60%\"}},[_vm._v(\"RNA Sequence (A/C/G/U only)\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.taskConfig[0].seq),expression:\"taskConfig[0].seq\"}],domProps:{\"value\":(_vm.taskConfig[0].seq)},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.taskConfig[0], \"seq\", $event.target.value)}}}),_vm._m(0),_vm._m(1),_c('p',[_vm._v(\"Lowercase is not accepted.\")])])]),_c('tr',[_c('td',[_vm._v(\"RNA Secondary Structure (Optional)\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.taskConfig[0].ss),expression:\"taskConfig[0].ss\"}],domProps:{\"value\":(_vm.taskConfig[0].ss)},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.taskConfig[0], \"ss\", $event.target.value)}}}),_c('p',[_vm._v(\"Please use Dot-bracket Notation. All parentheses and brackets should be paired. Pseudo-knots are supported.\")]),_vm._m(2)])]),_c('tr',[_c('td',[_vm._v(\"Simulation Time:\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.taskConfig[0].simTime),expression:\"taskConfig[0].simTime\"}],domProps:{\"value\":(_vm.taskConfig[0].simTime)},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.taskConfig[0], \"simTime\", $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Replica 1 Temperature (DMD units):\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.taskConfig[0].repT[0]),expression:\"taskConfig[0].repT[0]\"}],domProps:{\"value\":(_vm.taskConfig[0].repT[0])},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.taskConfig[0].repT, 0, $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Replica 2 Temperature (DMD units):\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.taskConfig[0].repT[1]),expression:\"taskConfig[0].repT[1]\"}],domProps:{\"value\":(_vm.taskConfig[0].repT[1])},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.taskConfig[0].repT, 1, $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Replica 3 Temperature (DMD units):\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.taskConfig[0].repT[2]),expression:\"taskConfig[0].repT[2]\"}],domProps:{\"value\":(_vm.taskConfig[0].repT[2])},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.taskConfig[0].repT, 2, $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Replica 4 Temperature (DMD units):\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.taskConfig[0].repT[3]),expression:\"taskConfig[0].repT[3]\"}],domProps:{\"value\":(_vm.taskConfig[0].repT[3])},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.taskConfig[0].repT, 3, $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Replica 5 Temperature (DMD units):\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.taskConfig[0].repT[4]),expression:\"taskConfig[0].repT[4]\"}],domProps:{\"value\":(_vm.taskConfig[0].repT[4])},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.taskConfig[0].repT, 4, $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Replica 6 Temperature (DMD units):\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.taskConfig[0].repT[5]),expression:\"taskConfig[0].repT[5]\"}],domProps:{\"value\":(_vm.taskConfig[0].repT[5])},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.taskConfig[0].repT, 5, $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Replica 7 Temperature (DMD units):\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.taskConfig[0].repT[6]),expression:\"taskConfig[0].repT[6]\"}],domProps:{\"value\":(_vm.taskConfig[0].repT[6])},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.taskConfig[0].repT, 6, $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Replica 8 Temperature (DMD units):\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.taskConfig[0].repT[7]),expression:\"taskConfig[0].repT[7]\"}],domProps:{\"value\":(_vm.taskConfig[0].repT[7])},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.taskConfig[0].repT, 7, $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Replica Exchange Interval (DMD units):\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.taskConfig[0].repInt),expression:\"taskConfig[0].repInt\"}],domProps:{\"value\":(_vm.taskConfig[0].repInt)},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.taskConfig[0], \"repInt\", $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Heat Exchange Coefficient (Berendsen Thermostat, DMD Units):\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.taskConfig[0].heatExchCoeff),expression:\"taskConfig[0].heatExchCoeff\"}],domProps:{\"value\":(_vm.taskConfig[0].heatExchCoeff)},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.taskConfig[0], \"heatExchCoeff\", $event.target.value)}}})])])])])]):_vm._e()]):_vm._e(),(_vm.taskType===-1||_vm.taskType===1)?_c('div',[_c('div',[(_vm.taskType===-1||_vm.taskType===1)?_c('div',{staticClass:\"step-box-header\",on:{\"click\":function($event){_vm.showTypeContent=1}}},[_vm._v(\" 2. RNA Thermodynamic Analysis \"),_c('div',{staticClass:\"step-box-button\"},[(_vm.taskType===-1)?_c('a',{on:{\"click\":function($event){_vm.taskType=1}}},[_vm._v(\"Choose this task\")]):_vm._e(),(_vm.taskType===1)?_c('a',{on:{\"click\":function($event){_vm.taskType=-1}}},[_vm._v(\"Choose a different task\")]):_vm._e()])]):_vm._e(),(_vm.taskType===1||_vm.showTypeContent===1)?_c('div',{staticClass:\"step-box-content\"},[_vm._v(\" In Thermodynamic analysis mode, various thermodynamic properties of RNA folding is inferred using replica-exchange DMD simulation. \")]):_vm._e()]),(_vm.taskType===1)?_c('div',[_c('h4',[_vm._v(\"Step 2: Please fill these inputs:\")]),_c('div',{staticClass:\"step-table\"},[_c('table',[_c('tr',[_c('td',{staticStyle:{\"width\":\"60%\"}},[_vm._v(\"Task title (Optional)\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.taskConfig[1].title),expression:\"taskConfig[1].title\"}],domProps:{\"value\":(_vm.taskConfig[1].title)},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.taskConfig[1], \"title\", $event.target.value)}}})])]),_c('tr',[_c('td',{staticStyle:{\"width\":\"60%\"}},[_vm._v(\"Upload RNA Structure File (NDB Format)\")]),_c('td',[_c('input',{ref:\"pdb\",attrs:{\"type\":\"file\"}})])]),_c('tr',[_c('td',[_vm._v(\"Simulation Time:\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.taskConfig[1].simTime),expression:\"taskConfig[1].simTime\"}],domProps:{\"value\":(_vm.taskConfig[1].simTime)},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.taskConfig[1], \"simTime\", $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Replica 1 Temperature (DMD units):\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.taskConfig[1].repT[0]),expression:\"taskConfig[1].repT[0]\"}],domProps:{\"value\":(_vm.taskConfig[1].repT[0])},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.taskConfig[1].repT, 0, $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Replica 2 Temperature (DMD units):\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.taskConfig[1].repT[1]),expression:\"taskConfig[1].repT[1]\"}],domProps:{\"value\":(_vm.taskConfig[1].repT[1])},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.taskConfig[1].repT, 1, $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Replica 3 Temperature (DMD units):\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.taskConfig[1].repT[2]),expression:\"taskConfig[1].repT[2]\"}],domProps:{\"value\":(_vm.taskConfig[1].repT[2])},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.taskConfig[1].repT, 2, $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Replica 4 Temperature (DMD units):\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.taskConfig[1].repT[3]),expression:\"taskConfig[1].repT[3]\"}],domProps:{\"value\":(_vm.taskConfig[1].repT[3])},on:{\"input\":function($event){if($event.target.composing){ return; }_vm.$set(_vm.taskConfig[1].repT, 3, $event.target.value)}}})])]),_c('tr',[_c('td',[_vm._v(\"Replica 5 Temperature (DMD units):\")]),_c('td',[_c('input',{directives:[{name:\"model\",rawName:\"v-model\",value:(_vm.taskConfig[1].repT[4]),expression:\"taskConfig[1].repT[4]\"}],domProps:{\"value\":(_vm.taskConfig[1].repT[4])},on:{\"input\":function($event){if($event.target.composing){ return; 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style=\"color:red\">Error {{i+1}}:</b>\n      </el-col>\n      <el-col :span=\"18\">\n        <span v-html=\"error\"></span>\n      </el-col>\n    </el-row>\n    <span slot=\"footer\" class=\"dialog-footer\">\n      <el-button type=\"info\" @click=\"submitResultVisible=false\">Close</el-button>\n    </span>\n  </el-dialog>\n  -->\n\n  <div style=\"border-bottom: 2px dotted #111111;font: normal normal 18px 'trebuchet ms', georgia, arial;color: #686667;margin-bottom:30px\">\n    Submit a task\n  </div>\n\n  <h4>Step 1: Select the Type of Task</h4>\n  <div>\n\n    <!-- RNA Structure Prediction (with RNA sequence only) -->\n    <div v-if=\"taskType===-1||taskType===0\">\n      <!-- Step 1 -->\n      <div v-if=\"taskType===-1||taskType===0\">\n        <!-- Step 1 Head -->\n        <div @click=\"showTypeContent=0\" class=\"step-box-header\">\n          1. RNA Modeling\n          <div class=\"step-box-button\">\n            <a v-if=\"taskType===-1\" @click=\"taskType=0\">Choose this task</a>\n            <a v-if=\"taskType===0\" @click=\"taskType=-1\">Choose a different task</a>\n          </div>\n          <div class=\"clear:both\"></div>\n        </div>\n\n        <!-- Step 1 Content -->\n        <div v-if=\"showTypeContent===0\" class=\"step-box-content\">\n          In RNA structure prediction, folding starts from a linear conformation of the protein at the initial temperature given, and the temperature is reduced at the specified rate until the system reaches the final temperature. The user may also specify the RNA sequence using a FASTA/NDB file format and replica exchahnge folding simulation is performed starting from a linear RNA conformation.\n        </div>\n      </div>\n\n      <div v-if=\"taskType===0\">\n        <h4>Step 2: Please fill these inputs:</h4>\n        <div class=\"step-table\">\n          <table>\n            <tr><td style=\"width:60%\">Task title (Optional)</td><td><input v-model=\"taskConfig[0].title\"></td></tr>\n\n            <tr>\n              <td style=\"width:60%\">RNA Sequence (A/C/G/U only)</td><td><input v-model=\"taskConfig[0].seq\">\n                <p><b>Example</b>: ACGUACCGU</p>\n                <p>Only 'A', 'U', 'G', 'C' are accepted. <span style=\"color:#b10808\">'T' is not accepted!!!</span></p>\n                <p>Lowercase is not accepted.</p>\n              </td>\n            </tr>\n\n            <tr>\n              <td>RNA Secondary Structure (Optional)</td>\n              <td><input v-model=\"taskConfig[0].ss\">\n                <p>Please use Dot-bracket Notation. All parentheses and brackets should be paired. Pseudo-knots are supported.</p>\n                <p>\n                  <b>Correct Example 1</b>: (((...))) <br>\n                  <b>Correct Example 2</b>: (((((..[[[)))))..]]]<br>\n                  <b style=\"color:#b10808\">Wrong Example</b>: (((...]]]\n                </p>\n              </td>\n            </tr>\n            <tr><td>Simulation Time:</td><td><input v-model=\"taskConfig[0].simTime\"></td></tr>\n            <tr><td>Replica 1 Temperature (DMD units):</td><td><input v-model=\"taskConfig[0].repT[0]\"></td></tr>\n            <tr><td>Replica 2 Temperature (DMD units):</td><td><input v-model=\"taskConfig[0].repT[1]\"></td></tr>\n            <tr><td>Replica 3 Temperature (DMD units):</td><td><input v-model=\"taskConfig[0].repT[2]\"></td></tr>\n            <tr><td>Replica 4 Temperature (DMD units):</td><td><input v-model=\"taskConfig[0].repT[3]\"></td></tr>\n            <tr><td>Replica 5 Temperature (DMD units):</td><td><input v-model=\"taskConfig[0].repT[4]\"></td></tr>\n            <tr><td>Replica 6 Temperature (DMD units):</td><td><input v-model=\"taskConfig[0].repT[5]\"></td></tr>\n            <tr><td>Replica 7 Temperature (DMD units):</td><td><input v-model=\"taskConfig[0].repT[6]\"></td></tr>\n            <tr><td>Replica 8 Temperature (DMD units):</td><td><input v-model=\"taskConfig[0].repT[7]\"></td></tr>\n            <tr><td>Replica Exchange Interval (DMD units):</td><td><input v-model=\"taskConfig[0].repInt\"></td></tr>\n            <tr><td>Heat Exchange Coefficient (Berendsen Thermostat, DMD Units):</td><td><input v-model=\"taskConfig[0].heatExchCoeff\"></td></tr>\n          </table>\n        </div>\n      </div>\n\n      <!-- Step 3 -->\n      <!--\n      <div v-if=\"taskType===0\">\n        Step 3: Select your outputs:\n        <div>\n          <table>\n            <tr><td>Predicted RNA structures: </td><td><input type=\"checkbox\" v-model=\"taskConfig[0].predStruct\"></td></tr>\n            <tr><td>Number of energy-minimized structures to predict: </td><td></td></tr>\n            <tr><td>Free energies of predicted structures (tabulated):</td><td></td></tr>\n            <tr><td>Binary trajectory data files:</td><td></td></tr>\n            <tr><td>Echo-data files: periodic energy, Rg etc.: </td><td></td></tr>\n            <tr><td>Periodic trajectory snapshots: rawFiles.zip (Replica Exchange files, *.rxo).:</td><td></td></tr>\n          </table>\n        </div>\n      </div>\n      -->\n    </div>\n\n    <!-- Thermodynamic Analysis -->\n    <div v-if=\"taskType===-1||taskType===1\">\n      <!-- Step 1 -->\n      <div>\n        <!-- Step 1 Head -->\n        <div @click=\"showTypeContent=1\" class=\"step-box-header\" v-if=\"taskType===-1||taskType===1\">\n          2. RNA Thermodynamic Analysis\n          <div class=\"step-box-button\">\n            <a v-if=\"taskType===-1\" @click=\"taskType=1\">Choose this task</a>\n            <a v-if=\"taskType===1\" @click=\"taskType=-1\">Choose a different task</a>\n          </div>\n        </div>\n\n        <!-- Step 1 Content -->\n        <div class=\"step-box-content\" v-if=\"taskType===1||showTypeContent===1\">\n          In Thermodynamic analysis mode, various thermodynamic properties of RNA folding is inferred using replica-exchange DMD simulation.\n        </div>\n      </div>\n\n      <!-- Step 2 -->\n      <div v-if=\"taskType===1\">\n        <h4>Step 2: Please fill these inputs:</h4>\n        <div class=\"step-table\">\n          <table>\n            <tr><td style=\"width:60%\">Task title (Optional)</td><td><input v-model=\"taskConfig[1].title\"></td></tr>\n            <tr><td style=\"width:60%\">Upload RNA Structure File (NDB Format)</td><td><input type=\"file\" ref=\"pdb\"></td></tr>\n            <tr><td>Simulation Time:</td><td><input v-model=\"taskConfig[1].simTime\"></td></tr>\n            <tr><td>Replica 1 Temperature (DMD units):</td><td><input v-model=\"taskConfig[1].repT[0]\"></td></tr>\n            <tr><td>Replica 2 Temperature (DMD units):</td><td><input v-model=\"taskConfig[1].repT[1]\"></td></tr>\n            <tr><td>Replica 3 Temperature (DMD units):</td><td><input v-model=\"taskConfig[1].repT[2]\"></td></tr>\n            <tr><td>Replica 4 Temperature (DMD units):</td><td><input v-model=\"taskConfig[1].repT[3]\"></td></tr>\n            <tr><td>Replica 5 Temperature (DMD units):</td><td><input v-model=\"taskConfig[1].repT[4]\"></td></tr>\n            <tr><td>Replica 6 Temperature (DMD units):</td><td><input v-model=\"taskConfig[1].repT[5]\"></td></tr>\n            <tr><td>Replica 7 Temperature (DMD units):</td><td><input v-model=\"taskConfig[1].repT[6]\"></td></tr>\n            <tr><td>Replica 8 Temperature (DMD units):</td><td><input v-model=\"taskConfig[1].repT[7]\"></td></tr>\n            <tr><td>Replica Exchange Interval (DMD units):</td><td><input v-model=\"taskConfig[1].repInt\"></td></tr>\n            <tr><td>Heat Exchange Coefficient (Berendsen Thermostat, DMD Units):</td><td><input v-model=\"taskConfig[1].heatExchCoeff\"></td></tr>\n          </table>\n        </div>\n      </div>\n\n      <!-- Step 3 -->\n      <!--\n      <div v-if=\"taskType===1\">\n        Step 3: Select your outputs:\n        <div>\n          <table>\n            <tr><td>Data for RMS deviations of trajectory snapshots from input structure:</td><td></td></tr>\n            <tr><td>Number of energy-minimized structures to predict: </td><td></td></tr>\n            <tr><td>Free energies of predicted structures (tabulated):</td><td></td></tr>\n            <tr><td>Binary trajectory data files:</td><td></td></tr>\n            <tr><td>Echo-data files: periodic energy, Rg etc.: </td><td></td></tr>\n            <tr><td>Periodic trajectory snapshots: rawFiles.zip (Replica Exchange files, *.rxo).:</td><td></td></tr>\n          </table>\n        </div>\n      </div>\n      -->\n    </div>\n\n    <!-- RNA Structure Refinement Using Constraints -->\n    <div v-if=\"taskType===-1||taskType===2\">\n      <!-- Step 1 -->\n      <div>\n        <!-- Step 1 Head -->\n        <div @click=\"showTypeContent=2\" class=\"step-box-header\" v-if=\"taskType===-1||taskType===2\">\n          3. RNA Modeling with HRP\n          <div class=\"step-box-button\">\n            <a v-if=\"taskType===-1\" @click=\"taskType=2\">Choose this task</a>\n            <a v-if=\"taskType===2\" @click=\"taskType=-1\">Choose a different task</a>\n          </div>\n        </div>\n\n        <!-- Step 1 Content -->\n        <div class=\"step-box-content\" v-if=\"taskType===2||showTypeContent===2\">\n          Refinement of RNA structure using constraints information, such as base pairing and long-range constraints.\n        </div>\n      </div>\n\n      <!-- Step 2 -->\n      <div v-if=\"taskType===2\">\n        <h4>Step 2: Please fill these inputs:</h4>\n        <div class=\"step-table\">\n          <table>\n            <tr><td style=\"width:60%\">Task title (Optional)</td><td><input v-model=\"taskConfig[2].title\"></td></tr>\n            <tr><td style=\"width:60%\">RNA Sequence (A/C/G/U only):</td><td><input v-model=\"taskConfig[2].seq\">\n                <p><b>Example</b>: ACGUACCGU</p>\n                <p>Only 'A', 'U', 'G', 'C' are accepted. <span style=\"color:#b10808\">'T' is not accepted!!!</span></p>\n                <p>Lowercase is not accepted.</p>\n            </td></tr>\n            <tr>\n              <td>RNA Secondary Structure (Optional)</td>\n              <td><input v-model=\"taskConfig[2].ss\">\n                <p>Please use Dot-bracket Notation. All parentheses and brackets should be paired. Pseudo-knots are supported.</p>\n                <p>\n                  <b>Correct Example 1</b>: (((...))) <br>\n                  <b>Correct Example 2</b>: (((((..[[[)))))..]]]<br>\n                  <b style=\"color:#b10808\">Wrong Example</b>: (((...]]]\n                </p>\n              </td>\n            </tr>\n            <tr><td>Upload Hydroxyl Radical Probing File (Optional):</td><td><input type=\"file\" ref=\"hrp\">\n                <p>Click <b><a :href=\"$store.state.host + '/ifoldrna/examples/MBox.hrp'\">here</a></b> to download example HRP file.</p>\n            </td></tr>\n            <tr><td>Simulation Time:</td><td><input v-model=\"taskConfig[2].simTime\"></td></tr>\n            <tr><td>Replica 1 Temperature (DMD units):</td><td><input v-model=\"taskConfig[2].repT[0]\"></td></tr>\n            <tr><td>Replica 2 Temperature (DMD units):</td><td><input v-model=\"taskConfig[2].repT[1]\"></td></tr>\n            <tr><td>Replica 3 Temperature (DMD units):</td><td><input v-model=\"taskConfig[2].repT[2]\"></td></tr>\n            <tr><td>Replica 4 Temperature (DMD units):</td><td><input v-model=\"taskConfig[2].repT[3]\"></td></tr>\n            <tr><td>Replica 5 Temperature (DMD units):</td><td><input v-model=\"taskConfig[2].repT[4]\"></td></tr>\n            <tr><td>Replica 6 Temperature (DMD units):</td><td><input v-model=\"taskConfig[2].repT[5]\"></td></tr>\n            <tr><td>Replica 7 Temperature (DMD units):</td><td><input v-model=\"taskConfig[2].repT[6]\"></td></tr>\n            <tr><td>Replica 8 Temperature (DMD units):</td><td><input v-model=\"taskConfig[2].repT[7]\"></td></tr>\n            <tr><td>Replica Exchange Interval (DMD units):</td><td><input v-model=\"taskConfig[2].repInt\"></td></tr>\n            <tr><td>Heat Exchange Coefficient (Berendsen Thermostat, DMD Units):</td><td><input v-model=\"taskConfig[2].heatExchCoeff\"></td></tr>\n          </table>\n        </div>\n      </div>\n\n    </div>\n\n\n    <!-- RNA Structure Refinement Using NMR -->\n    <div v-if=\"taskType===-1||taskType===3\">\n      <!-- Step 1 -->\n      <div>\n        <!-- Step 1 Head -->\n        <div @click=\"showTypeContent=3\" class=\"step-box-header\" v-if=\"taskType===-1||taskType===3\">\n          4. RNA Modeling with NMR\n          <div class=\"step-box-button\">\n            <a v-if=\"taskType===-1\" @click=\"taskType=3\">Choose this task</a>\n            <a v-if=\"taskType===3\" @click=\"taskType=-1\">Choose a different task</a>\n          </div>\n        </div>\n\n        <!-- Step 1 Content -->\n        <div class=\"step-box-content\" v-if=\"taskType===3||showTypeContent===3\">\n          Refinement of RNA structure using NMR xplor constraints.\n        </div>\n      </div>\n\n      <!-- Step 2 -->\n      <div v-if=\"taskType===3\">\n        <h4>Step 2: Please fill these inputs:</h4>\n        <div class=\"step-table\">\n          <table>\n            <tr><td style=\"width:60%\">Task title (Optional)</td><td><input v-model=\"taskConfig[3].title\"></td></tr>\n            <tr><td style=\"width:60%\">RNA Sequence (A/C/G/U only):</td><td><input v-model=\"taskConfig[3].seq\">\n                <p><b>Example</b>: ACGUACCGU</p>\n                <p>Only 'A', 'U', 'G', 'C' are accepted. <span style=\"color:#b10808\">'T' is not accepted!!!</span></p>\n                <p>Lowercase is not accepted.</p>\n            </td></tr>\n            <tr>\n              <td>RNA Secondary Structure (Optional)</td>\n              <td><input v-model=\"taskConfig[3].ss\">\n                <p>Please use Dot-bracket Notation. All parentheses and brackets should be paired. Pseudo-knots are supported.</p>\n                <p>\n                  <b>Correct Example 1</b>: (((...))) <br>\n                  <b>Correct Example 2</b>: (((((..[[[)))))..]]]<br>\n                  <b style=\"color:#b10808\">Wrong Example</b>: (((...]]]\n                </p>\n              </td>\n            </tr>\n            <tr><td>Upload NMR .mr File:</td><td><input type=\"file\" ref=\"nmr\">\n                <p>Click <b>here</b> to download example NMR file.</p>\n            </td></tr>\n            <tr><td>Upload Hoogsteen Base Pairing File (optional):</td><td><input type=\"file\"></td></tr>\n            <tr><td>Upload Reverse Watson-Crick Base Pairing File (optional):</td><td><input type=\"file\"></td></tr>\n            <tr><td>Upload Reverse Hoogsteen Base Pairing File (optional):</td><td><input type=\"file\"></td></tr>\n            <tr><td>Simulation Time:</td><td><input v-model=\"taskConfig[3].simTime\"></td></tr>\n            <tr><td>Replica 1 Temperature (DMD units):</td><td><input v-model=\"taskConfig[3].repT[0]\"></td></tr>\n            <tr><td>Replica 2 Temperature (DMD units):</td><td><input v-model=\"taskConfig[3].repT[1]\"></td></tr>\n            <tr><td>Replica 3 Temperature (DMD units):</td><td><input v-model=\"taskConfig[3].repT[2]\"></td></tr>\n            <tr><td>Replica 4 Temperature (DMD units):</td><td><input v-model=\"taskConfig[3].repT[3]\"></td></tr>\n            <tr><td>Replica 5 Temperature (DMD units):</td><td><input v-model=\"taskConfig[3].repT[4]\"></td></tr>\n            <tr><td>Replica 6 Temperature (DMD units):</td><td><input v-model=\"taskConfig[3].repT[5]\"></td></tr>\n            <tr><td>Replica 7 Temperature (DMD units):</td><td><input v-model=\"taskConfig[3].repT[6]\"></td></tr>\n            <tr><td>Replica 8 Temperature (DMD units):</td><td><input v-model=\"taskConfig[3].repT[7]\"></td></tr>\n            <tr><td>Replica Exchange Interval (DMD units):</td><td><input v-model=\"taskConfig[3].repInt\"></td></tr>\n            <tr><td>Heat Exchange Coefficient (Berendsen Thermostat, DMD Units):</td><td><input v-model=\"taskConfig[3].heatExchCoeff\"></td></tr>\n          </table>\n        </div>\n      </div>\n\n    </div>\n\n    <div v-if=\"taskType!==-1\" style=\"margin:15px 0px\">\n      <button @click=\"submit\" type=\"button\">Submit Task</button>\n    </div>\n  </div>\n</div>\n</template>\n\n<script>\nimport { bus } from '../bus.js'\nimport axios from 'axios'\n\nexport default {\n  name: 'Submit',\n\n  data () {\n    return {\n      errors: [],\n      showTypeContent: 0,\n      taskType: -1,\n      taskConfig: [\n        {\n          title: '',\n          seq: '',\n          ss: '',\n          simTime: 20000,\n          repT: [0.200, 0.225, 0.250, 0.270, 0.300, 0.333, 0.367, 0.400],\n          repInt: 1000,\n          heatExchCoeff: 0.1,\n          predStruct: true\n        }, {\n          title: '',\n          simTime: 20000,\n          repT: [0.200, 0.225, 0.250, 0.270, 0.300, 0.333, 0.367, 0.400],\n          repInt: 1000,\n          heatExchCoeff: 0.1\n        }, {\n          title: '',\n          seq: '',\n          ss: '',\n          simTime: 20000,\n          repT: [0.200, 0.225, 0.250, 0.270, 0.300, 0.333, 0.367, 0.400],\n          repInt: 1000,\n          heatExchCoeff: 0.1\n        }, {\n          title: '',\n          seq: '',\n          ss: '',\n          simTime: 20000,\n          repT: [0.200, 0.225, 0.250, 0.270, 0.300, 0.333, 0.367, 0.400],\n          repInt: 1000,\n          heatExchCoeff: 0.1\n        }\n      ],\n      content: ''\n    }\n  },\n\n  computed: {\n    frontConfig () {\n      return this.$store.state.frontConfig\n    }\n  },\n\n  methods: {\n    post (url, p, files, cb1 = () => {}, cb2 = () => {}) {\n      let parts = [new Blob([JSON.stringify(p)], { type: 'application/json' })]\n      let fileToSend = new File(parts, 'front-config.json', {\n        type: 'application/json'\n      })\n\n      let formData = new FormData()\n\n      formData.append('par', fileToSend)\n      for (let fileName in files) {\n        console.log(fileName)\n        console.log(files[fileName])\n        formData.append(fileName, files[fileName])\n      }\n\n      axios({\n        method: 'post',\n        url,\n        data: formData,\n        config: {headers: {'Content-Type': 'multipart/form-data'}},\n        withCredentials: true\n      }).then(response => {\n        cb1(response)\n//        console.log(response)\n      }).catch(error => {\n        cb2(error)\n//        console.log(error.response)\n      })\n    },\n\n    submit () {\n      let v = this\n      if (v.taskType !== -1) {\n        let p = {}\n        for (let i in v.taskConfig[v.taskType]) {\n          p[i] = v.taskConfig[v.taskType][i]\n        }\n        p.taskType = v.taskType\n\n        let url = v.$store.state.host + `/dokhlab/actions/ifoldrna/submit`\n\n        let files = {}\n\n        if (v.taskType === 1) {\n          if (v.$refs.pdb.files.length > 0) {\n            files['pdb'] = v.$refs.pdb.files[0]\n          } else {\n            alert('Please upload the structure file!')\n            return\n          }\n        } else if (v.taskType === 2) {\n          if (v.$refs.hrp.files.length > 0) {\n            files['hrp'] = v.$refs.hrp.files[0]\n          }\n        } else if (v.taskType === 3) {\n          if (v.$refs.nmr.files.length > 0) {\n            files['nmr'] = v.$refs.nmr.files[0]\n          }\n        }\n\n        v.post(url, p, files, response => {\n          let r = response.data\n          if (r.status === 1) {\n            window.location.href = '#/Queue'\n          } else {\n            alert('Submission Failed!')\n          }\n        })\n      }\n    },\n\n    resizeIframe (obj) {\n      console.log(this.$refs.frame)\n      this.$refs.frame.style.height = this.$refs.frame.contentWindow.document.body.scrollHeight + 'px'\n    }\n  },\n\n  mounted () {\n  }\n}\n</script>\n\n<!-- Add \"scoped\" attribute to limit CSS to this component only -->\n<style scoped>\n\n.step-box-header {\n  background-color: rgb(187, 187, 187);\n  color: rgb(51, 51, 51);\n  font: bold 12px \"Trebuchet MS\", Arial;\n  padding: 5px;\n  cursor: pointer;\n  height: 20px;\n}\n\n.step-box-content {\n  border-color: rgb(187, 187, 187);\n  border-style: solid;\n  border-width: 1px;\n  border-image: none 100% / 1 / 0 stretch;\n  margin: 0px;\n  overflow: visible;\n  padding: 4px;\n  font-size: 12px;\n  min-height: 100px;\n}\n\n.step-table table {\n  border-color: rgb(187, 187, 187);\n  border-style: solid;\n  border-width: 1px;\n  table-layout: fixed;\n  width: 100%;\n}\n\n.step-table table td {\n  font-size: 12px;\n  color: #686868;\n  border-color: rgb(187, 187, 187);\n  border-style: solid;\n  border-width: 1px;\n  padding: 4px;\n}\n\n.step-box-button {\n  float: right;\n  border: 1px outset #111111;\n  width: 150px;\n  text-align: center;\n  padding: 0 0 0 4px;\n  text-align: center;\n  color: rgb(51, 51, 51);\n  font: bold 12px \"Trebuchet MS\", Arial;\n}\n\n.step-box-button a {\n  color: rgb(51, 51, 51);\n}\n\n.step-box-button:hover {\n  border: 1px inset #111111;\n}\n\n.input-example {\n  color: #b10808;\n}\n\n.error-row {\n  margin-bottom: 15px;\n}\n\ninput {\n  width: 100%;\n}\n\n</style>\n","import mod from \"-!../../../node_modules/cache-loader/dist/cjs.js??ref--12-0!../../../node_modules/thread-loader/dist/cjs.js!../../../node_modules/babel-loader/lib/index.js!../../../node_modules/cache-loader/dist/cjs.js??ref--0-0!../../../node_modules/vue-loader/lib/index.js??vue-loader-options!./Submit.vue?vue&type=script&lang=js&\"; export default mod; export * from \"-!../../../node_modules/cache-loader/dist/cjs.js??ref--12-0!../../../node_modules/thread-loader/dist/cjs.js!../../../node_modules/babel-loader/lib/index.js!../../../node_modules/cache-loader/dist/cjs.js??ref--0-0!../../../node_modules/vue-loader/lib/index.js??vue-loader-options!./Submit.vue?vue&type=script&lang=js&\"","import { render, staticRenderFns } from \"./Submit.vue?vue&type=template&id=40af1834&scoped=true&\"\nimport script from \"./Submit.vue?vue&type=script&lang=js&\"\nexport * from \"./Submit.vue?vue&type=script&lang=js&\"\nimport style0 from \"./Submit.vue?vue&type=style&index=0&id=40af1834&scoped=true&lang=css&\"\n\n\n/* normalize component */\nimport normalizer from \"!../../../node_modules/vue-loader/lib/runtime/componentNormalizer.js\"\nvar component = normalizer(\n  script,\n  render,\n  staticRenderFns,\n  false,\n  null,\n  \"40af1834\",\n  null\n  \n)\n\nexport default component.exports","var render = function () {var _vm=this;var _h=_vm.$createElement;var _c=_vm._self._c||_h;return _c('gcse:search')}\nvar staticRenderFns = []\n\nexport { render, staticRenderFns }","<template>\n  <gcse:search></gcse:search>\n</template>\n\n<script>\n\nimport { bus } from '../bus.js'\n\nfunction foo () {\n  var cx = '000830983957212989610:l1defdlgcwa'\n  var gcse = document.createElement('script')\n  gcse.type = 'text/javascript'\n  gcse.async = true\n  gcse.src = 'https://cse.google.com/cse.js?cx=' + cx\n  var s = document.getElementsByTagName('script')[0]\n  s.parentNode.insertBefore(gcse, s)\n}\n\nfoo()\n\nexport default {\n  name: 'Search',\n\n  data () {\n    return {\n    }\n  },\n\n  computed: {\n    frontConfig () {\n      return this.$store.state.frontConfig\n    }\n  },\n\n  mounted () {\n    this.$nextTick(() => {\n      bus.$emit('switch-router', 'Search')\n    })\n  }\n}\n</script>\n\n","import mod from \"-!../../../node_modules/cache-loader/dist/cjs.js??ref--12-0!../../../node_modules/thread-loader/dist/cjs.js!../../../node_modules/babel-loader/lib/index.js!../../../node_modules/cache-loader/dist/cjs.js??ref--0-0!../../../node_modules/vue-loader/lib/index.js??vue-loader-options!./Search.vue?vue&type=script&lang=js&\"; export default mod; export * from \"-!../../../node_modules/cache-loader/dist/cjs.js??ref--12-0!../../../node_modules/thread-loader/dist/cjs.js!../../../node_modules/babel-loader/lib/index.js!../../../node_modules/cache-loader/dist/cjs.js??ref--0-0!../../../node_modules/vue-loader/lib/index.js??vue-loader-options!./Search.vue?vue&type=script&lang=js&\"","import { render, staticRenderFns } from \"./Search.vue?vue&type=template&id=5b412d13&\"\nimport script from \"./Search.vue?vue&type=script&lang=js&\"\nexport * from \"./Search.vue?vue&type=script&lang=js&\"\n\n\n/* normalize component */\nimport normalizer from \"!../../../node_modules/vue-loader/lib/runtime/componentNormalizer.js\"\nvar component = normalizer(\n  script,\n  render,\n  staticRenderFns,\n  false,\n  null,\n  null,\n  null\n  \n)\n\nexport default component.exports","var render = function () {var _vm=this;var _h=_vm.$createElement;var _c=_vm._self._c||_h;return _c('div',{staticClass:\"task\"},[(_vm.task)?_c('div',{staticClass:\"task-panel\"},[_c('el-row',{staticClass:\"task-row\"},[_c('el-col',{staticClass:\"item-label\",attrs:{\"span\":6}},[_vm._v(\"ID\")]),_c('el-col',{attrs:{\"span\":16}},[_vm._v(_vm._s(_vm.task.id))])],1),_c('el-row',{staticClass:\"task-row\"},[_c('el-col',{staticClass:\"item-label\",attrs:{\"span\":6}},[_vm._v(\"Type\")]),_c('el-col',{attrs:{\"span\":16}},[_vm._v(_vm._s(_vm.taskTypeName(_vm.task.taskType)))])],1),_c('el-row',{staticClass:\"task-row\"},[_c('el-col',{staticClass:\"item-label\",attrs:{\"span\":6}},[_vm._v(\"Status\")]),_c('el-col',{attrs:{\"span\":16}},[_vm._v(_vm._s(_vm.task.status))])],1),(_vm.task.seq)?_c('el-row',{staticClass:\"task-row\"},[_c('el-col',{staticClass:\"item-label\",attrs:{\"span\":6}},[_vm._v(\"Sequence\")]),_c('el-col',{attrs:{\"span\":24}},[_vm._v(_vm._s(_vm.task.seq)+\" (\"+_vm._s(_vm.task.seq.length)+\")\")])],1):_vm._e(),(_vm.task.ss)?_c('el-row',{staticClass:\"task-row\"},[_c('el-col',{staticClass:\"item-label\",attrs:{\"span\":6}},[_vm._v(\"Secondary Structure\")]),_c('el-col',{attrs:{\"span\":24}},[_vm._v(_vm._s(_vm.task.ss)+\" (\"+_vm._s(_vm.task.ss.length)+\")\")])],1):_vm._e(),(_vm.task.files.pdb)?_c('el-row',{staticClass:\"task-row\"},[_c('el-col',{staticClass:\"item-label\",attrs:{\"span\":6}},[_vm._v(\"Structure\")]),_c('el-col',{attrs:{\"span\":16}},[_c('a',{staticStyle:{\"cursor\":\"pointer\"},on:{\"click\":function($event){return _vm.download(_vm.task.files.pdb)}}},[_vm._v(\"input.pdb\")])])],1):_vm._e(),(_vm.task.status==='finished')?_c('el-row',{staticClass:\"task-row\"},[_c('el-col',{staticClass:\"item-label\",attrs:{\"span\":6}},[_vm._v(\"Results\")]),_c('el-col',{attrs:{\"span\":24}},_vm._l((parseInt(_vm.task.results.clusters)),function(cluster){return _c('el-row',{key:cluster},[_c('el-col',{attrs:{\"offset\":4,\"span\":4}},[_vm._v(\"Cluster \"+_vm._s(cluster))]),_c('el-col',{attrs:{\"span\":4}},[_c('a',{attrs:{\"href\":_vm.$store.state.host + \"/dokhlab/actions/ifoldrna/cluster?id=\" + _vm.id + \"&cluster=\" + cluster,\"target\":\"_blank\"}},[_vm._v(\"cluster.\"+_vm._s(cluster)+\".pdb\")])])],1)}),1)],1):_vm._e(),(_vm.task.status==='failed')?_c('el-row',{staticClass:\"task-row\"},[_c('el-col',{staticClass:\"item-label\",attrs:{\"span\":6}},[_vm._v(\"Log\")]),_c('el-col',{attrs:{\"span\":16}},[_c('a',{attrs:{\"href\":_vm.$store.state.host + \"/dokhlab/actions/ifoldrna/log?id=\" + _vm.id}},[_vm._v(\"log.txt\")])])],1):_vm._e()],1):_c('div',[_vm._v(\" Loading\"),_c('i',{staticClass:\"el-icon-loading\"})])])}\nvar staticRenderFns = []\n\nexport { render, staticRenderFns }","<template>\n<div class=\"task\">\n  <div class=\"task-panel\" v-if=\"task\">\n    <el-row class=\"task-row\">\n      <el-col :span=\"6\" class=\"item-label\">ID</el-col>\n      <el-col :span=\"16\">{{task.id}}</el-col>\n    </el-row>\n\n    <el-row class=\"task-row\">\n      <el-col :span=\"6\" class=\"item-label\">Type</el-col>\n      <el-col :span=\"16\">{{taskTypeName(task.taskType)}}</el-col>\n    </el-row>\n\n    <el-row class=\"task-row\">\n      <el-col :span=\"6\" class=\"item-label\">Status</el-col>\n      <el-col :span=\"16\">{{task.status}}</el-col>\n    </el-row>\n\n    <el-row class=\"task-row\" v-if=\"task.seq\">\n      <el-col :span=\"6\" class=\"item-label\">Sequence</el-col>\n      <el-col :span=\"24\">{{task.seq}} ({{task.seq.length}})</el-col>\n    </el-row>\n\n    <el-row class=\"task-row\" v-if=\"task.ss\">\n      <el-col :span=\"6\" class=\"item-label\">Secondary Structure</el-col>\n      <el-col :span=\"24\">{{task.ss}} ({{task.ss.length}})</el-col>\n    </el-row>\n\n    <el-row class=\"task-row\" v-if=\"task.files.pdb\">\n      <el-col :span=\"6\" class=\"item-label\">Structure</el-col>\n      <el-col :span=\"16\"><a style=\"cursor:pointer\" @click=\"download(task.files.pdb)\">input.pdb</a></el-col>\n    </el-row>\n\n    <el-row class=\"task-row\" v-if=\"task.status==='finished'\">\n      <el-col :span=\"6\" class=\"item-label\">Results</el-col>\n      <el-col :span=\"24\">\n        <el-row v-for=\"cluster in parseInt(task.results.clusters)\" :key=\"cluster\">\n          <el-col :offset=\"4\" :span=\"4\">Cluster {{cluster}}</el-col>\n          <el-col :span=\"4\"><a :href=\"$store.state.host + `/dokhlab/actions/ifoldrna/cluster?id=${id}&cluster=${cluster}`\" target=\"_blank\">cluster.{{cluster}}.pdb</a></el-col>\n        </el-row>\n      </el-col>\n    </el-row>\n\n    <el-row class=\"task-row\" v-if=\"task.status==='failed'\">\n      <el-col :span=\"6\" class=\"item-label\">Log</el-col>\n      <el-col :span=\"16\"><a :href=\"$store.state.host + `/dokhlab/actions/ifoldrna/log?id=${id}`\">log.txt</a></el-col>\n    </el-row>\n\n  </div>\n  <div v-else>\n    Loading<i class=\"el-icon-loading\"></i>\n  </div>\n</div>\n</template>\n\n<script>\nimport axios from 'axios'\n// import * as NGL from 'ngl'\n// import { bus } from '../bus.js'\n\naxios.defaults.headers.post['Content-Type'] = 'multipart/form-data'\n\nexport default {\n  name: 'Task',\n\n  data () {\n    return {\n      task: ''\n    }\n  },\n\n  computed: {\n    id () {\n      return this.$route.params.id\n    }\n  },\n\n  methods: {\n    taskTypeName (i) {\n      let names = [\n        'RNA modeling with no restraints',\n        'Thermodynamic analysis',\n        'RNA modeling with HRP restraints',\n        'RNA modeling with NMR restraints'\n      ]\n      return names[i]\n    },\n\n    download (content) {\n      var blob = new Blob([content], { type: 'text/plain;charset=utf-8;' })\n\n      var link = document.createElement('a')\n      if (link.download !== undefined) { // feature detection\n        // Browsers that support HTML5 download attribute\n        var url = URL.createObjectURL(blob)\n        link.setAttribute('href', url)\n        link.setAttribute('download', 'input.pdb')\n        link.style.visibility = 'hidden'\n        document.body.appendChild(link)\n        link.click()\n        document.body.removeChild(link)\n      }\n    },\n\n    check () {\n      var v = this\n      axios({\n        method: 'get',\n        url: v.$store.state.host + '/dokhlab/actions/ifoldrna/task?id=' + v.id,\n        withCredentials: true\n      }).then(response => {\n        v.task = response.data\n\n        if (v.task.par) {\n          v.task.par = v.task.par ? JSON.parse(v.task.par) : ''\n        }\n        if (v.task.files) {\n          v.task.files = v.task.files ? JSON.parse(v.task.files) : ''\n//          console.log(v.task.files)\n        }\n        if (v.task.results) {\n          v.task.results = v.task.results ? JSON.parse(v.task.results) : ''\n        }\n\n//        console.log(v.task)\n\n        if (!v.task.par) {\n          v.task.par = JSON.parse(v.task.files.par)\n        }\n\n        console.log(JSON.stringify(v.task.results))\n\n        for (let i in v.task.par) {\n          v.task[i] = v.task.par[i]\n        }\n\n        if (v.task.status !== 'finished') {\n          v.timeout = setTimeout(() => { v.check() }, 5000)\n        }\n      }).catch(() => {\n        console.log('Retrieve files failed!')\n      })\n    }\n  },\n\n  mounted () {\n    var v = this\n    v.$nextTick(function () {\n//      v.stage = new NGL.Stage('b-factor', { backgroundColor: 'white' })\n\n      v.check()\n    })\n  },\n\n  destroyed () {\n    var v = this\n    if (v.timeout) {\n      clearTimeout(v.timeout)\n    }\n  }\n}\n</script>\n\n<!-- Add \"scoped\" attribute to limit CSS to this component only -->\n<style scoped>\n\n.task-panel {\n  overflow-wrap: break-word;\n  font-size: 12px;\n  margin-top: 20px;\n}\n\n.task-row {\n  margin-bottom: 20px;\n}\n\n.item-label {\n  font-weight: 700;\n  margin-bottom: 5px;\n}\n\n</style>\n","import mod from \"-!../../../node_modules/cache-loader/dist/cjs.js??ref--12-0!../../../node_modules/thread-loader/dist/cjs.js!../../../node_modules/babel-loader/lib/index.js!../../../node_modules/cache-loader/dist/cjs.js??ref--0-0!../../../node_modules/vue-loader/lib/index.js??vue-loader-options!./Task.vue?vue&type=script&lang=js&\"; export default mod; export * from \"-!../../../node_modules/cache-loader/dist/cjs.js??ref--12-0!../../../node_modules/thread-loader/dist/cjs.js!../../../node_modules/babel-loader/lib/index.js!../../../node_modules/cache-loader/dist/cjs.js??ref--0-0!../../../node_modules/vue-loader/lib/index.js??vue-loader-options!./Task.vue?vue&type=script&lang=js&\"","import { render, staticRenderFns } from \"./Task.vue?vue&type=template&id=6c04b4c0&scoped=true&\"\nimport script from \"./Task.vue?vue&type=script&lang=js&\"\nexport * from \"./Task.vue?vue&type=script&lang=js&\"\nimport style0 from \"./Task.vue?vue&type=style&index=0&id=6c04b4c0&scoped=true&lang=css&\"\n\n\n/* normalize component */\nimport normalizer from \"!../../../node_modules/vue-loader/lib/runtime/componentNormalizer.js\"\nvar component = normalizer(\n  script,\n  render,\n  staticRenderFns,\n  false,\n  null,\n  \"6c04b4c0\",\n  null\n  \n)\n\nexport default component.exports","import Vue from 'vue'\nimport Router from 'vue-router'\nimport Profile from '../components/Profile'\nimport Help from '../components/Help'\n// import Users from '../components/Users'\nimport Submit from '../components/Submit'\nimport Search from '../components/Search'\nimport Queue from '../../Queue'\nimport Task from '../components/Task'\n\nVue.use(Router)\n\nexport default new Router({\n  routes: [\n    {\n      path: '/',\n      redirect: '/submit'\n    },\n\n    {\n      path: '/profile',\n      name: 'Profile',\n      component: Profile\n    },\n\n    {\n      path: '/help',\n      name: 'Help',\n      component: Help\n    },\n\n//    {\n//      path: '/users',\n//      name: 'Users',\n//      component: Users\n//    },\n\n    {\n      path: '/submit',\n      name: 'Submit',\n      component: Submit\n    },\n\n    {\n      path: '/search',\n      name: 'Search',\n      component: Search\n    },\n\n    {\n      path: '/queue',\n      name: 'Queue',\n      component: Queue\n    },\n\n    {\n      path: '/task/:id',\n      name: 'Task',\n      component: Task\n    }\n  ]\n})\n","// The Vue build version to load with the `import` command\n// (runtime-only or standalone) has been set in webpack.base.conf with an alias.\nimport Vue from 'vue'\nimport Vuex from 'vuex'\nimport App from './App'\nimport ElementUI from 'element-ui'\nimport './theme.scss'\nimport router from './router'\nimport upperFirst from 'lodash/upperFirst'\nimport camelCase from 'lodash/camelCase'\nimport axios from 'axios'\nimport store from '../store'\n\nVue.config.productionTip = false\n\nVue.use(ElementUI)\nVue.use(Vuex)\n\n/* eslint-disable no-new */\nnew Vue({\n  el: '#app',\n  router,\n  store: new Vuex.Store(store),\n  template: '<App/>',\n  components: { App },\n  render: h => h(App)\n})\n","export * from \"-!../../../node_modules/mini-css-extract-plugin/dist/loader.js??ref--6-oneOf-1-0!../../../node_modules/css-loader/dist/cjs.js??ref--6-oneOf-1-1!../../../node_modules/vue-loader/lib/loaders/stylePostLoader.js!../../../node_modules/postcss-loader/src/index.js??ref--6-oneOf-1-2!../../../node_modules/cache-loader/dist/cjs.js??ref--0-0!../../../node_modules/vue-loader/lib/index.js??vue-loader-options!./Help.vue?vue&type=style&index=0&id=521a5851&scoped=true&lang=css&\"","module.exports = __webpack_public_path__ + \"img/nav_manageusers.f5c8b543.jpg\";","module.exports = __webpack_public_path__ + \"img/nav_help.aeda14b6.jpg\";","export * from \"-!../../node_modules/mini-css-extract-plugin/dist/loader.js??ref--6-oneOf-1-0!../../node_modules/css-loader/dist/cjs.js??ref--6-oneOf-1-1!../../node_modules/vue-loader/lib/loaders/stylePostLoader.js!../../node_modules/postcss-loader/src/index.js??ref--6-oneOf-1-2!../../node_modules/cache-loader/dist/cjs.js??ref--0-0!../../node_modules/vue-loader/lib/index.js??vue-loader-options!./App.vue?vue&type=style&index=0&lang=css&\"","module.exports = __webpack_public_path__ + \"img/nav_queue.87330420.jpg\";","module.exports = __webpack_public_path__ + \"img/nav_profile.54bee85f.jpg\";","var render = function () {var _vm=this;var _h=_vm.$createElement;var _c=_vm._self._c||_h;return _c('div',{staticClass:\"taskmanagement\"},[(_vm.showTasks)?_c('div',[_c('table',{staticClass:\"tasks\"},[_vm._m(0),_c('tbody',{staticClass:\"tasks\"},_vm._l((_vm.tasks),function(task,itask){return _c('tr',{key:itask},[_c('td',[_vm._v(_vm._s(task.id))]),_c('td',[_vm._v(_vm._s((\"\" + (task.userid))==='0' ? 'Guest' : task.userid))]),_c('td',[_vm._v(_vm._s('title' in task ? task.title : ''))]),_c('td',{domProps:{\"textContent\":_vm._s(_vm.showTime(task.tsubmit))}}),_c('td',{domProps:{\"textContent\":_vm._s(_vm.showTime(task.tprocess))}}),_c('td',{domProps:{\"textContent\":_vm._s(_vm.showTime(task.tfinish))}}),_c('td',[(task.status==='queued')?_c('div',[_c('i',[_vm._v(\"Queued\")])]):(task.status==='failed')?_c('div',[_c('i',[_vm._v(\"Failed\")])]):(task.status==='finished')?_c('div',[_vm._v(\" Done \"),((\"\" + (task.userid))==='0' || (\"\" + (_vm.$store.state.user.id))===(\"\" + (task.userid)) || (\"\" + (_vm.$store.state.user.level))===\"10\")?_c('i',{staticClass:\"el-icon-view\",staticStyle:{\"cursor\":\"pointer\"},on:{\"click\":function($event){return _vm.$store.dispatch('direct',(\"#/Task/\" + (task.id)))}}}):_vm._e()]):(task.status==='finished')?_c('div',{domProps:{\"innerHTML\":_vm._s(_vm.finishedStatus(task.id))}}):_c('div',[_c('i',{staticClass:\"el-icon-loading\",staticStyle:{\"margin-left\":\"10px\"}})])])])}),0)]),_c('el-pagination',{attrs:{\"background\":\"\",\"layout\":\"prev, pager, next\",\"page-count\":_vm.npages},on:{\"current-change\":function($event){_vm.page=$event;_vm.check(false)}}})],1):_vm._e()])}\nvar staticRenderFns = [function () {var _vm=this;var _h=_vm.$createElement;var _c=_vm._self._c||_h;return _c('thead',[_c('th',[_vm._v(\"Task ID\")]),_c('th',[_vm._v(\"User\")]),_c('th',[_vm._v(\"Title\")]),_c('th',[_vm._v(\"Submit Time\")]),_c('th',[_vm._v(\"Process Time\")]),_c('th',[_vm._v(\"Finish Time\")]),_c('th',[_vm._v(\"Status\")])])}]\n\nexport { render, staticRenderFns }","<template>\n<div class=\"taskmanagement\">\n  <div v-if=\"showTasks\">\n    <table class=\"tasks\">\n      <thead>\n        <th>Task ID</th>\n        <th>User</th>\n        <th>Title</th>\n        <th>Submit Time</th>\n        <th>Process Time</th>\n        <th>Finish Time</th>\n        <th>Status</th>\n      </thead>\n      <tbody class=\"tasks\">\n        <tr v-for=\"(task,itask) in tasks\" :key=\"itask\">\n          <!--\n          <td><a :href=\"'#/Task/'+task.id\">{{ task.id }}</a></td>\n          -->\n          <td>{{ task.id }}</td>\n          <td>{{`${task.userid}`==='0' ? 'Guest' : task.userid}}</td>\n          <td>{{'title' in task ? task.title : ''}}</td>\n          <td v-text=\"showTime(task.tsubmit)\"></td>\n          <td v-text=\"showTime(task.tprocess)\"></td>\n          <td v-text=\"showTime(task.tfinish)\"></td>\n          <td>\n            <div v-if=\"task.status==='queued'\"><i>Queued</i></div>\n            <div v-else-if=\"task.status==='failed'\"><i>Failed</i></div>\n            <div v-else-if=\"task.status==='finished'\">\n              Done <i v-if=\"`${task.userid}`==='0' || `${$store.state.user.id}`===`${task.userid}` || `${$store.state.user.level}`===`10`\" class=\"el-icon-view\" @click=\"$store.dispatch('direct',`#/Task/${task.id}`)\" style=\"cursor:pointer\"></i>\n            </div>\n            <div v-html=\"finishedStatus(task.id)\" v-else-if=\"task.status==='finished'\"></div>\n            <div v-else><i style=\"margin-left: 10px\" class=\"el-icon-loading\"></i></div>\n          </td>\n        </tr>\n      </tbody>\n    </table>\n    <el-pagination background layout=\"prev, pager, next\" @current-change=\"page=$event;check(false)\" :page-count=\"npages\"></el-pagination>\n  </div>\n</div>\n</template>\n\n<script>\nimport axios from 'axios'\n\naxios.defaults.headers.post['Content-Type'] = 'multipart/form-data'\n\nexport default {\n  name: 'Queue',\n  data () {\n    return {\n      showTasks: false,\n      runningStatus: '<i style=\"margin-left: 10px\" class=\"el-icon-loading\"></i>',\n      tasks: [],\n      intervalId: 0,\n      page: 1,\n      npages: 0,\n      server: 'cpi'\n    }\n  },\n  methods: {\n    showTime (timestamp) {\n      let date = new Date(timestamp * 1000)\n      let year = date.getFullYear()\n      let month = date.getMonth() + 1\n      let day = date.getDate()\n      let hour = date.getHours()\n      let minute = date.getMinutes()\n//        date.getSeconds(),\n      return timestamp ? `${year}-${month}-${day} ${hour}:${minute}` : '-'\n    },\n\n    finishedStatus (id) {\n      return '<a href=\"#/Task/' + id + '\"><i style=\"color:#878d99; margin-left: 10px;\" class=\"view el-icon-view\"></i></a>'\n    },\n\n    check (doContinue) {\n      let next = () => {\n        if (doContinue) {\n          setTimeout(() => {\n            this.check(true)\n          }, 3000)\n        }\n      }\n\n      if (this.$route.name === 'Queue') {\n        axios({\n          method: 'get',\n          withCredentials: true,\n          url: `${this.$store.state.host}/dokhlab/actions/queue?server=${this.$store.state.server}&page=${this.page}`\n        }).then(response => {\n          let r = response.data\n          this.tasks = r.tasks\n          this.npages = r.pages\n          this.tasks.sort((a, b) => {\n            return b.tsubmit - a.tsubmit\n          })\n          this.showTasks = true\n        }).catch(() => {\n          console.log('get failed')\n        }).finally(() => {\n          next()\n        })\n      } else {\n        next()\n      }\n    }\n  },\n\n  mounted () {\n    this.check(true)\n  },\n\n  destroyed () {\n  }\n}\n</script>\n\n<!-- Add \"scoped\" attribute to limit CSS to this component only -->\n<style scoped>\n\n.taskmanagement {\n  margin-left: 10px;\n  height: 100%;\n}\n\ntable.tasks {\n  text-align: center;\n  color: rgb(96, 98, 102);\n  margin: 30px 0px;\n}\n\nthead {\n  display: block;\n}\n\ntbody.tasks {\n  display: block;\n  overflow-y: auto;\n  overflow-x: hidden;\n}\n\nth {\n  color: #878d99;\n}\n\nth {\n  padding: 12px 12px 0px 12px;\n  width: 120px;\n}\n\ntd {\n  padding: 12px;\n  width: 120px;\n}\n\na {\n  color: rgb(144, 147, 153);\n  text-decoration: None;\n}\n\n</style>\n","import mod from \"-!../node_modules/cache-loader/dist/cjs.js??ref--12-0!../node_modules/thread-loader/dist/cjs.js!../node_modules/babel-loader/lib/index.js!../node_modules/cache-loader/dist/cjs.js??ref--0-0!../node_modules/vue-loader/lib/index.js??vue-loader-options!./Queue.vue?vue&type=script&lang=js&\"; export default mod; export * from \"-!../node_modules/cache-loader/dist/cjs.js??ref--12-0!../node_modules/thread-loader/dist/cjs.js!../node_modules/babel-loader/lib/index.js!../node_modules/cache-loader/dist/cjs.js??ref--0-0!../node_modules/vue-loader/lib/index.js??vue-loader-options!./Queue.vue?vue&type=script&lang=js&\"","import { render, staticRenderFns } from \"./Queue.vue?vue&type=template&id=415accd3&scoped=true&\"\nimport script from \"./Queue.vue?vue&type=script&lang=js&\"\nexport * from \"./Queue.vue?vue&type=script&lang=js&\"\nimport style0 from \"./Queue.vue?vue&type=style&index=0&id=415accd3&scoped=true&lang=css&\"\n\n\n/* normalize component */\nimport normalizer from \"!../node_modules/vue-loader/lib/runtime/componentNormalizer.js\"\nvar component = normalizer(\n  script,\n  render,\n  staticRenderFns,\n  false,\n  null,\n  \"415accd3\",\n  null\n  \n)\n\nexport default component.exports","module.exports = __webpack_public_path__ + \"img/nav_submit.9d835a16.jpg\";","export * from \"-!../../../node_modules/mini-css-extract-plugin/dist/loader.js??ref--6-oneOf-1-0!../../../node_modules/css-loader/dist/cjs.js??ref--6-oneOf-1-1!../../../node_modules/vue-loader/lib/loaders/stylePostLoader.js!../../../node_modules/postcss-loader/src/index.js??ref--6-oneOf-1-2!../../../node_modules/cache-loader/dist/cjs.js??ref--0-0!../../../node_modules/vue-loader/lib/index.js??vue-loader-options!./Submit.vue?vue&type=style&index=0&id=40af1834&scoped=true&lang=css&\"","export * from \"-!../node_modules/mini-css-extract-plugin/dist/loader.js??ref--6-oneOf-1-0!../node_modules/css-loader/dist/cjs.js??ref--6-oneOf-1-1!../node_modules/vue-loader/lib/loaders/stylePostLoader.js!../node_modules/postcss-loader/src/index.js??ref--6-oneOf-1-2!../node_modules/cache-loader/dist/cjs.js??ref--0-0!../node_modules/vue-loader/lib/index.js??vue-loader-options!./Queue.vue?vue&type=style&index=0&id=415accd3&scoped=true&lang=css&\""],"sourceRoot":""}